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Issues list

New release based on Java 17
#1071 opened Jul 27, 2023 by rizwan-ishtiaq
1
Suggestion: Sonar S2129 Constructors should not be used to instantiate "String", "BigInteger", "BigDecimal" and primitive-wrapper classes
#1066 opened Jun 25, 2023 by jlerbsc
2
Suggestion: Sonar S1130 "throws" declarations should not be superfluous
#1061 opened May 10, 2023 by jlerbsc
4
Test Smell: it is not a good test practice to use the loop in the test
#1038 opened Aug 17, 2022 by TestSmell
@tmrpavan
4
NCBIQBlastService.sendAlignmentRequest | Always throws ArrayIndexOutOfBoundsException
#1033 opened Jun 30, 2022 by FC123321
1
Harmonize Profile and LightweightProfile
#1018 opened Jan 27, 2022 by sbliven 6.1.0
o.b.n.core.sequence.CDSSequence doesn't reverse-complement correctly bug Bugs and bugfixes
#1016 opened Jan 4, 2022 by richarda23
Maintenance of ontology module
#1013 opened Jan 4, 2022 by richarda23
1
Add standard documented way how to reduce structure to a subset of chains
#1003 opened Dec 9, 2021 by rdk
2
Support of D-AminoAcids enhancement Improvement of existing code or method new feature New method or data structure
#993 opened Nov 7, 2021 by aalhossary
7
Q. Inquiry for the Alignment Render in the BioJava. question Open discussions about the library
#983 opened Oct 20, 2021 by RoshanShrestha123
6
biojava-modfinder requires external resources that are no longer freely available bug Bugs and bugfixes
#975 opened Sep 30, 2021 by josemduarte
1
Fetch, cache, load, and view electron density maps
#947 opened Jul 25, 2021 by aalhossary
Improve test coverage - currently 49.5% in bio-java core
#944 opened Jul 23, 2021 by richarda23
6
GenBankWriter does not use information in the original header
#942 opened Jul 12, 2021 by jamesmorris
3
EMBL file parser is not parsing features enhancement Improvement of existing code or method help wanted Questions and support for users
#923 opened Mar 10, 2021 by MaxGreil
2
toConciseAlignmentString is non-deterministic
#907 opened Dec 7, 2020 by sbliven
1
Automate production of CITATION.cff file task
#846 opened Aug 20, 2019 by sbliven
5
MultipleAlignmentJmol modifies state, causing NullPointerException bug Bugs and bugfixes
#817 opened Dec 31, 2018 by sbliven
4
CE-Symm assumes models come from BA bug Bugs and bugfixes
#808 opened Oct 25, 2018 by sbliven
4
Symmetry detection fails for long twisted assemblies bug Bugs and bugfixes
#795 opened Aug 25, 2018 by biocryst
4
MMCif behavior when auth_seq_id is missing
#775 opened Jun 15, 2018 by sbliven 6.1.0
@sbliven
8
Incorrect extinction coefficient for oxidized Cys
#766 opened May 2, 2018 by darnells
1
Extend dssp implementation to also support the promotif standard help wanted Questions and support for users new feature New method or data structure
#764 opened Apr 22, 2018 by josemduarte
2
CONECT/LINK line-length bug fix #2 for PDB Parser bug Bugs and bugfixes
#760 opened Mar 28, 2018 by Sheraf-DNG
4
ProTip! Exclude everything labeled bug with -label:bug.