Merge tag '3.35.0' into stable

.github/workflows/check_pylint_diff.sh

@@ -15,7 +15,7 @@ UNCOMMITED_PATCH="$TMP_REPO/uncommited.patch"
 SCRIPT=$(basename "$0")
 PYLINT="$(command -v pylint 2>/dev/null || true)"
 RADON="$(command -v radon 2>/dev/null || true)"
-PYLINT_ARGS="--output-format=parseable"
+PYLINT_ARGS="--msg-template='{path}:{line}: [{msg_id}({symbol}), {obj}] {msg}'"
 RADON_ARGS='cc --min C --no-assert --show-closures --show-complexity --average'
 
 trap "status=\$?; cd '$GIT_REPO'; rm -rf '$TMP_REPO'; exit \$status" EXIT
@@ -127,7 +127,7 @@ Number_of_issues ()
     cached="$1"
     {   cat "$cached" 2>/dev/null ||
         echo "$CHANGED_FILES" |
-            xargs "$PYLINT" $PYLINT_ARGS |
+            xargs "$PYLINT" "$PYLINT_ARGS" |
             tee "$cached"
     } | awk -F'[\\. ]' '/^Your code has been rated at /{ print $7 }' || true
 }

.github/workflows/doc.yml

@@ -15,7 +15,7 @@ jobs:
       fail-fast: False
       matrix:
         python: [3.9]
-        os: [ubuntu-18.04]
+        os: [ubuntu-22.04]
 
     steps:
       - uses: actions/checkout@v2

.github/workflows/test.yml

@@ -12,19 +12,19 @@ jobs:
   lint:
     runs-on: ubuntu-20.04
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
         with:
           fetch-depth: '2'
 
       - name: Setup Python
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
           python-version: 3.8
 
       - name: Install Tox
         run: |
           python -m pip install --upgrade pip
-          python -m pip install --upgrade tox tox-pip-version
+          python -m pip install --upgrade tox
 
       - name: Run Pylint
         run:  tox -e pylint-ci
@@ -45,7 +45,7 @@ jobs:
             python-version: '3.10'
             tox_env: orange-latest
             name: Latest
-          - os: ubuntu-18.04
+          - os: ubuntu-20.04
             python-version: 3.8
             tox_env: orange-oldest
             name: Oldest dependencies
@@ -54,7 +54,6 @@ jobs:
             tox_env: pyqt6
             name: PyQt6
 
-
     services:
       postgres:
         image: orangedm/postgres:11
@@ -75,21 +74,27 @@ jobs:
           - 1433:1433
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
       - name: Setup Python
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
           python-version: ${{ matrix.python-version }}
 
       - name: Install linux system dependencies
         run: |
           sudo apt-get update
-          sudo apt-get install -y libxkbcommon-x11-0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-xinerama0 libxcb-xfixes0 libegl1-mesa libxcb-shape0
+          sudo apt-get install -y libxkbcommon-x11-0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-xinerama0 libxcb-xfixes0 libegl1-mesa libxcb-shape0 libxcb-cursor0
 
       - name: Install Tox
         run: |
           python -m pip install --upgrade pip
-          python -m pip install --upgrade tox tox-pip-version
+          python -m pip install --upgrade tox
+
+      - name: Skip testing workflows at coverage
+        if: |
+          matrix.python-version == '3.8' && matrix.tox_env == 'orange-released'
+        run: |
+          echo 'SKIP_EXAMPLE_WORKFLOWS=1' >> $GITHUB_ENV
 
       - name: Run Tox
         run: catchsegv xvfb-run -a -s "$XVFBARGS" tox -e ${{ matrix.tox_env }}
@@ -98,12 +103,10 @@ jobs:
           ORANGE_TEST_DB_URI: postgres://postgres_user:postgres_password@localhost:5432/postgres_db|mssql://SA:sqlServerPassw0rd@localhost:1433
 
       - name: Upload code coverage
-        if: |
-          matrix.python-version == '3.8' &&  
-          matrix.tox_env == 'orange-released'
-        run: |
-          pip install codecov
-          codecov
+        if: matrix.python-version == '3.8' && matrix.tox_env == 'orange-released'
+        uses: codecov/codecov-action@v3
+        with:
+          fail_ci_if_error: true
 
   test_on_macos_and_windows:
     runs-on: ${{ matrix.os }}
@@ -112,7 +115,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [macos-11, windows-2019]
+        os: [macos-latest, windows-latest]
         python-version: [3.8, 3.9, '3.10']
         tox_env: [orange-released]
         name: [Released]
@@ -121,34 +124,34 @@ jobs:
             python-version: '3.10'
             tox_env: orange-latest
             name: Latest
-          - os: macos-11
+          - os: macos-latest
             python-version: '3.10'
             tox_env: orange-latest
             name: Latest
           - os: windows-latest
             python-version: '3.10'
             tox_env: pyqt6
             name: PyQt6
-          - os: macos-11
+          - os: macos-latest
             python-version: 3.9
             tox_env: pyqt6
             name: PyQt6
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
           python-version: ${{ matrix.python-version }}
 
       - name: Install system dependencies on MacOS
         run: brew install libomp
-        if: matrix.os == 'macos-10.15' || matrix.os == 'macos-11'
+        if: runner.os == 'macOS'
 
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          python -m pip install --upgrade tox tox-pip-version
+          python -m pip install --upgrade tox
 
       - name: Test with Tox
         run: |

CHANGELOG.md

@@ -4,6 +4,54 @@ Change Log
 [next] - TBA
 ------------
 
+[3.35.0] - 2023-05-05
+---------------------                                                                                       
+##### Enhancements
+* Neighbours - Sort resulting instances in order according to distance ([#6425](../../pull/6425))
+* SOM - Warn user to restart optimization after parameter change ([#6438](../../pull/6438))
+* Update requirements-core.txt
+* TimeVariable - add formats with UTC offset
+* Skip pandas==2.0.0
+* Data Table: Subset input ([#6405](../../pull/6405))
+* Data Table: Restore applied sorting ([#6370](../../pull/6370))
+* widgets.data.utils.tableview: Disconnect specific slot
+* Select Rows: Better label for purging unused values/features ([#6383](../../pull/6383))
+* Single input data table widget ([#6346](../../pull/6346))
+* Continuize: Specific options for variables ([#6181](../../pull/6181))
+* Datasets: Add language selection ([#6358](../../pull/6358))
+* MDS: Show Kruskal stress ([#6309](../../pull/6309))
+* Group By - add quantile aggregations ([#6304](../../pull/6304))
+* MCC: Add Matthews correlation coefficient score ([#6264](../../pull/6264))
+* Improve scorer selection in Test and Score and predictions ([#6282](../../pull/6282))
+* Feature Constructor: Enable comprehensions and lambdas in expressions ([#6272](../../pull/6272))
+
+##### Bugfixes
+* Edit Domain no longer forgets its settings ([#6415](../../pull/6415))
+* SOM: Store selection Settings in list instead of np.ndarray ([#6423](../../pull/6423))
+* pca: n_features_ attribute of decomposition.PCA is deprecated in favor of n_features_in_ ([#6249](../../pull/6249))
+* Update requirements-core.txt
+* TimeVariable - add formats with UTC offset
+* Skip pandas==2.0.0
+* tableview: Fix errors with sparse basket columns ([#6409](../../pull/6409))
+* owtable: Remove multiple connections to 'selectionFinished' ([#6404](../../pull/6404))
+* widgets.data.utils.tableview: Disconnect specific slot
+* Drop table after testing ([#6351](../../pull/6351))
+* MDS: Remove repeated updates at the end of optimization ([#6337](../../pull/6337))
+* Select Rows - Fix checked groups not considered in PyQt6 ([#6336](../../pull/6336))
+* Edit Domain - set have_time and have_date to time variables ([#6324](../../pull/6324))
+* Rank - make sorting setting PyQt6 compatible ([#6301](../../pull/6301))
+* Concatenate - preserve table names when compute value ignored ([#6331](../../pull/6331))
+* Fix unpickling domains: do not pickle indices (which can cause problems) ([#6317](../../pull/6317))
+* stats.utils: Don't count zeros as nans ([#6314](../../pull/6314))
+* File Widget: Fix recent urls save/restore ([#6259](../../pull/6259))
+* Fix Color for python 3.10 ([#6293](../../pull/6293))
+* listfilter: Fix dragDropActionDidComplete signal type ([#6292](../../pull/6292))
+* Table.from_table works correctly with boolean indices ([#6278](../../pull/6278))
+* Pythagorean Forest: Fix report ([#6276](../../pull/6276))
+* Implement predict() in simple tree and simple RF models ([#6258](../../pull/6258))
+* Bar Plot: Fix annotation by enumeration ([#6270](../../pull/6270))
+* Color: fix coloring of computed (processed) variables ([#6261](../../pull/6261))
+
 
 [3.34.1] - 2022-12-13
 --------------------
@@ -1735,7 +1783,8 @@ Change Log
 * Initial version based on Python 1.5.2 and Qt 2.3
 
 
-[next]: https://github.com/biolab/orange3/compare/3.34.1..HEAD
+[next]: https://github.com/biolab/orange3/compare/3.35.0..HEAD
+[3.34.1]: https://github.com/biolab/orange3/compare/3.34.1...3.35.0
 [3.34.1]: https://github.com/biolab/orange3/compare/3.34.0...3.34.1
 [3.34.0]: https://github.com/biolab/orange3/compare/3.33.0...3.34.0
 [3.33.0]: https://github.com/biolab/orange3/compare/3.32.0...3.33.0