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updating biolink 4.1.4 #161

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merged 2 commits into from
Mar 1, 2024
Merged

updating biolink 4.1.4 #161

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e9b23b9
updating biolink 4.1.4
sierra-moxon Mar 1, 2024
57f3eb1
fix tests
sierra-moxon Mar 1, 2024
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2 changes: 1 addition & 1 deletion bmt/toolkit.py
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Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@
Url = str
Path = str

LATEST_BIOLINK_RELEASE = "4.0.0"
LATEST_BIOLINK_RELEASE = "4.1.4"

REMOTE_PATH = f"https://raw.githubusercontent.com/biolink/biolink-model/v{LATEST_BIOLINK_RELEASE}/biolink-model.yaml"
PREDICATE_MAP = f"https://raw.githubusercontent.com/biolink/biolink-model/v{LATEST_BIOLINK_RELEASE}/predicate_mapping.yaml"
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4 changes: 1 addition & 3 deletions tests/unit/test_toolkit.py
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Expand Up @@ -663,8 +663,7 @@ def test_is_mixin(toolkit):


def test_is_translator_canonical_predicate(toolkit):
assert toolkit.is_translator_canonical_predicate("treats")
assert not toolkit.is_translator_canonical_predicate("treated by")
assert toolkit.is_translator_canonical_predicate("studied to treat")
assert not toolkit.is_translator_canonical_predicate("this_does_not_exist")
assert not toolkit.is_translator_canonical_predicate("completed by")
assert toolkit.is_translator_canonical_predicate("regulates")
Expand Down Expand Up @@ -952,7 +951,6 @@ def test_mapping(toolkit):


def test_get_slot_domain(toolkit):
assert NAMED_THING in toolkit.get_slot_domain("ameliorates")
assert "biological process" in toolkit.get_slot_domain(ENABLED_BY)
assert "biological process or activity" in toolkit.get_slot_domain(ENABLED_BY)
assert "pathway" in toolkit.get_slot_domain(
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