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SEMMEDDB:diagnoses should be mapped to biolink:diagnoses #942

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saramsey opened this issue Jan 21, 2022 · 0 comments
Closed

SEMMEDDB:diagnoses should be mapped to biolink:diagnoses #942

saramsey opened this issue Jan 21, 2022 · 0 comments

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@saramsey
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Is your feature request related to a problem? Please describe.
Currently, the relation SEMMEDDB:diagnoses is mapped to biolink:biomarker_for.

- SEMMEDDB:diagnoses

I believe these two predicates are not semantically equivalent. For most (probably more than 95%) of the triples in SemMedDB that have the SEMMEDDB:diagnoses relation, the subject concept has a semantic type of Procedure. Also, this semantically inequivalent mapping is causing problems with real use-cases for Translator, as shown here:
RTXteam/RTX#1774

As it happens, now there is a predicate biolink:diagnoses, which I think may be a better fit for SEMMEDDB:diagnoses:

diagnoses:

What working group (or team) did this request originate from?
Team Expander Agent

Note: This is relevant for members of NCATS Translator.

Describe the solution you'd like
Could the relation mapping be updated so that SEMMEDDB:diagnoses is mapped to biolink:diagnoses?

Additional information to support this request (optional)

Tag relevant members for discussion
@sierra-moxon

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