Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

fixes #942, fixes #940, fixes #939 #992

Merged
merged 3 commits into from Apr 9, 2022
Merged

fixes #942, fixes #940, fixes #939 #992

Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
f6bc38f
fixes #942
sierra-moxon Apr 9, 2022
0d1161f
fixes #940
sierra-moxon Apr 9, 2022
abf7633
fixes #939
sierra-moxon Apr 9, 2022
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
9 changes: 8 additions & 1 deletion biolink-model.yaml
View file
Open in desktop
Expand Up @@ -2124,6 +2124,7 @@ slots:
- SIO:001331 # diagnosis
exact_mappings:
- DrugCentral:5271
- SEMMEDDB:diagnoses

is diagnosed by:
is_a: related to at instance level
Expand Down Expand Up @@ -4892,7 +4893,6 @@ slots:
- NCIT:genetic_biomarker_related_to
- NCIT:is_molecular_abnormality_of_disease
- ORPHA:465410
- SEMMEDDB:diagnoses

# It may be helpful to introduce an intermediate predicate in between 'related_to' and 'expressed in'
# which would have a domain of 'biological entity' and range of 'anatomical entity', to map predicates
Expand Down Expand Up @@ -5073,10 +5073,14 @@ slots:
- SNOMED:has_finding_site
- SNOMED:has_indirect_procedure_site
- SNOMED:has_inherent_location
domain: named thing
range: named thing

location of:
is_a: related to at instance level
aliases: ['site of']
domain: named thing
range: named thing
description: >-
holds between material entity or site and a material entity
that is located within it (but not considered a part of it)
Expand Down Expand Up @@ -7933,6 +7937,9 @@ classes:
- UMLS
close_mappings:
- dcid:ChemicalCompound
narrow_mappings:
- NCIT:C20401 # monoclonal antibody
- SNOMEDCT:49616005 # monoclonal antibody (substance)

nucleic acid entity:
is_a: molecular entity
Expand Down