Merge pull request #594 from biolink/gpad_differ

gpad diff tool, calculate summary stats and group by columns, reports on exact and close matches as well as missing lines in one file compared to another.
biolink · Dec 1, 2021 · 7257dfa · 7257dfa
2 parents 84331c2 + fb37f9e
commit 7257dfa
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Showing 6 changed files with 455 additions and 2 deletions.
diff --git a/ontobio/io/assocparser.py b/ontobio/io/assocparser.py
@@ -311,6 +311,7 @@ def __str__(self):
         attribute_values = ["{att}={val}".format(att=att, val=dict([(k, v) for k, v in value.items()][:8]) if isinstance(value, dict) else value) for att, value in vars(self).items()]
         return "AssocParserConfig({})".format(",".join(attribute_values))
 
+
 class Report(object):
     """
     A report object that is generated as a result of a parse
@@ -345,7 +346,6 @@ class Report(object):
     RULE_PASS = "Passes GO Rule"
     INVALID_REFERENCES = "Only one reference per ID space allowed"
 
-
     def __init__(self, group="unknown", dataset="unknown", config=None):
         self.messages = []
         self.n_lines = 0