Ignore aspect test result for GPAD - geneontology/pipeline#280

biolink · Apr 26, 2022 · df15227 · df15227
1 parent 856ce52
commit df15227
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/ontobio/io/gpadparser.py b/ontobio/io/gpadparser.py
@@ -167,6 +167,10 @@ def parse_line(self, line):
 
         go_rule_results = qc.test_go_rules(assoc, self.config)
         for rule, result in go_rule_results.all_results.items():
+            if isinstance(rule, qc.GoRule28):
+                # ignore result of GORULE:0000028 since aspect check will always fail for GPAD and get repaired
+                continue
+
             if result.result_type == qc.ResultType.WARNING:
                 self.report.warning(line, assocparser.Report.VIOLATES_GO_RULE, "",
                                     msg="{id}: {message}".format(id=rule.id, message=result.message), rule=int(rule.id.split(":")[1]))