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biolink · May 2, 2017 · f09029c · f09029c
1 parent 7bc4b76
commit f09029c
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Showing 3 changed files with 12 additions and 3 deletions.
diff --git a/notebooks/Phenotype_Enrichment.ipynb b/notebooks/Phenotype_Enrichment.ipynb
@@ -139,6 +139,14 @@
     "        print(\"{:8.3g} {} {:40s}\".format(r['p'],r['c'],str(r['n'])))"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Given that the initial gene set is for retinitis pigmentosa genes, it's not surprising that enriched phenotype\n",
+    "terms are related to retinal degeneration"
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},

diff --git a/ontobio/__init__.py b/ontobio/__init__.py
@@ -1 +1 @@
-__version__ = '0.1.5'
+__version__ = '0.1.6'
diff --git a/ontobio/golr/golr_query.py b/ontobio/golr/golr_query.py
@@ -317,8 +317,9 @@ def exec(self, **kwargs):
 
         # map go-golr fields to standard
         for d in results.docs:
-            d['id'] = d['entity']
-            d['label'] = d['entity_label']
+            if 'entity' in d:
+                d['id'] = d['entity']
+                d['label'] = d['entity_label']
         payload = {
             'facet_counts': translate_facet_field(fcs),
             'pagination': {},