Merge pull request #637 from biolink/go-site-895-skip-test-if-ontolog…

…y-is-not-defined Skip check if ontology is None
biolink · May 19, 2023 · fb25bfd · fb25bfd
2 parents ecbb89f + 7daccc2
commit fb25bfd
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/ontobio/io/qc.py b/ontobio/io/qc.py
@@ -525,6 +525,9 @@ def make_protein_complex_descendents_if_not_present(self, ontology: Optional[ont
 
     def test(self, annotation: association.GoAssociation, config: assocparser.AssocParserConfig, group=None) -> TestResult:
         # An implementation note: This is done by testing if the DB (column 1) is ComplexPortal or DB Object type (column 12) is protein_complex
+        if config.ontology is None:
+            return self._result(True)
+
         db = annotation.subject.id.namespace
         objecttype = annotation.subject.type
         goterm = str(annotation.object.id)