Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Use correct go_context jsonld file in gaf->go-cam #167

Merged
merged 1 commit into from
Apr 21, 2018
Merged

Use correct go_context jsonld file in gaf->go-cam #167

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion notebooks/Phenotype_Enrichment.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -589,7 +589,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.5.2"
"version": "3.6.2"
}
},
"nbformat": 4,
Expand Down
5 changes: 4 additions & 1 deletion ontobio/rdfgen/assoc_rdfgen.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,10 @@
evt = Evidence()
upt = UpperLevel()

prefix_context = {key: value for context in curie_util.default_curie_maps + [curie_util.read_biocontext("minerva_context")] for key, value in context.items()}
# Pull the go_context file from prefixcommons.
# NOTE: this is a temporary measure. We will build the go json ld context as part of the pipeline in future
# See https://github.com/geneontology/go-site/issues/617
prefix_context = {key: value for context in curie_util.default_curie_maps + [curie_util.read_biocontext("go_context")] for key, value in context.items()}

HAS_SUPPORTING_REFERENCE = URIRef(expand_uri(evt.has_supporting_reference, cmaps=[evt._prefixmap]))

Expand Down