Hopefully the final restriction site issue fixed...

biologyguy · Dec 20, 2017 · eed42eb · eed42eb
1 parent 9b41850
commit eed42eb
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Showing 2 changed files with 16 additions and 14 deletions.
diff --git a/buddysuite/tests/test_seqbuddy/test_sb_api.py b/buddysuite/tests/test_seqbuddy/test_sb_api.py
@@ -1154,14 +1154,16 @@ def test_restriction_sites_circular(sb_resources, sb_odd_resources, hf):
 
     # circular
     tester = Sb.find_restriction_sites(sb_resources.get_one("d g"), topology="circular")
-    assert """LpnPI           1347..1350
-     LpnPI           75..78
-     LpnPI           81..84
-     LpnPI           118..121
-     LpnPI           216..219
+    assert """LpnPI           1227..1230
+     LpnPI           66..69
+     LpnPI           103..106
+     LpnPI           146..149
+     LpnPI           167..170
      LpnPI           223..226
-     LpnPI           250..253
-     LpnPI           305..308""" in str(tester)
+     LpnPI           281..284
+     LpnPI           308..311
+     LpnPI           320..323
+     LpnPI           397..400""" in str(tester)
 
     res_sites = [x for x in tester.restriction_sites if x[0] == "Mle-Panxα1"][0][1]
     new_res_dict = {}

diff --git a/buddysuite/tests/test_seqbuddy/test_sb_ui.py b/buddysuite/tests/test_seqbuddy/test_sb_ui.py
@@ -706,20 +706,20 @@ def test_find_restriction_sites_ui(capsys, sb_resources):
     Sb.command_line_ui(test_in_args, sb_resources.get_one('d f'), True)
     out, err = capsys.readouterr()
     assert """FEATURES             Location/Qualifiers
-     LpnPI           75..78
-     LpnPI           81..84
-     LpnPI           118..121""" in out
+     LpnPI           66..69
+     LpnPI           103..106
+     LpnPI           146..149""" in out
 
     # Test topology set as circular
     test_in_args = deepcopy(in_args)
     test_in_args.find_restriction_sites = [["LpnPI", "circ"]]
     Sb.command_line_ui(test_in_args, sb_resources.get_one('d f'), True)
     out, err = capsys.readouterr()
     assert """FEATURES             Location/Qualifiers
-     LpnPI           1347..1350
-     LpnPI           75..78
-     LpnPI           81..84
-     LpnPI           118..121""" in out
+     LpnPI           1227..1230
+     LpnPI           66..69
+     LpnPI           103..106
+     LpnPI           146..149""" in out
 
 
 # ######################  '-gbp', '--group_by_prefix' ###################### #