Update ModelObject

biomass/exec_model.py

@@ -34,36 +34,6 @@ class ModelObject(NetworkGraph):
 
     def __init__(self, path: str, biomass_model: ModuleType):
         super().__init__(path, biomass_model)
-        self._path = path
-        self._parameters = biomass_model.C.NAMES
-        self._species = biomass_model.V.NAMES
-        self.pval = biomass_model.param_values
-        self.ival = biomass_model.initial_values
-        self.problem = biomass_model.OptimizationProblem()
-        self.viz = biomass_model.Visualization()
-        self.rxn = biomass_model.ReactionNetwork()
-
-    @property
-    def path(self) -> str:
-        return self._path
-
-    @property
-    def parameters(self) -> List[str]:
-        return self._parameters
-
-    @property
-    def species(self) -> list:
-        return self._species
-
-    @property
-    def observables(self) -> List[str]:
-        duplicate = [
-            name for name in set(self.problem.obs_names) if self.problem.obs_names.count(name) > 1
-        ]
-        if not duplicate:
-            return self.problem.obs_names
-        else:
-            raise NameError(f"Duplicate observables: {', '.join(duplicate)}")
 
     def get_individual(self, paramset: int) -> np.ndarray:
         """