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VC with bionode-ncbi+tools (bash) with filtering #4

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thejmazz opened this issue May 22, 2016 · 4 comments
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VC with bionode-ncbi+tools (bash) with filtering #4

thejmazz opened this issue May 22, 2016 · 4 comments
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@thejmazz thejmazz commented May 22, 2016

@bmpvieira do you want to add basic filtering? or maybe give some tips/hints and I can try to add it myself. otherwise today I am going to compile my notes from the 4 papers and start playing with nextflow/snakemake if the filter stuff is not ready yet. also I think reading nextflow/snakemake might be better use of time today then experimenting myself with filtering

  • filter with khmer
  • filter with kmc
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