Software - Bioinformatics - Genomics
- Data Science / Machine Learning
- Python (Numpy, Pandas, Rapids, PyTorch, Datashader, Dask, Jupyter,...)
- R (tidyverse, ggplot2,...)
- Founder of Bionode.io community (Node.js Streams for Genomic Big Data)
- Advanced Shell Scripting (BASH, Fish, ZSH,...)
- Analysis Pipelines Workflows (Nextflow, SnakeMake,...)
- Full Stack
- Node.js, TypeScript, Ember, Angular, Express, MongoDB, SQL, HTML5, CSS3
- Docker, Singularity
- Google Cloud, Azure, AWS
- NixOS, Arch Linux, Ubuntu
- Git, GitHub, GitLab
- Unit Testing, Continuous Integration (TravisCI)
- Exposure and interests
- Rust, Swift
Communicating & Teaching (
🇵🇹 🇬🇧 🇫🇷 speaker)
- 2016-2017 | Awarded Mozilla Science Lab fellowship (one of four, out of 483 submissions) to travel around the world and champion Open Science through talks, workshops, and hackathons.
- 2016-2018 | Mentored 3 Google Summer of Code students for the Open Bioinformatics Foundation to build genomic data analysis workflows.
- 2014-2018 | Master's in Bioinformatics and R course instructor at Queen Mary, U. of London during PhD.
- 2012 | Instructor and Content Developer for Python 101 Course at U. of Lisbon
- Speaker at multiple international conferences, meetups and hackathons for Bioinformatics, Open Science, Reproducibility, and Node.js.
Education & Work Experience
- Since Oct 2021 | Senior Backend Developer @ Lifebit.ai
- 2019-2021 | Co-Chief Technology Officer @ Resurgo.com Applying Machine Learning and novel visualisation techniques to find target candidates for RNA therapeutics in diseases such as cancer and now COVID-19.
- 2018 | Senior Bioinformatics Developer @ Repositive.io
- 2014-2018 | PhD in Bioinformatics @ Queen Mary, U. of London
- 2012-2013 | FullStack Dev @ ESEB2013.com
- 2009-2013 | Bioinformatician @ CoBiG2
- 2004-2009 | Master's in Human Biology and Environment @ U. of Lisbon
- Other companies: Stencila (reproducible notebooks), Code for Science and Society (Dat project — distributed data protocol) and Geekli.st (backend dev).