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Bruno Vieira

Software - Bioinformatics - Genomics

🌐 Website ✉️ Email :octocat: Ⓜ️

Technical Skills

  • Data Science / Machine Learning
    • Python (Numpy, Pandas, Rapids, PyTorch, Datashader, Dask, Jupyter,...)
    • R (tidyverse, ggplot2,...)
  • Bioinformatics
    • Founder of community (Node.js Streams for Genomic Big Data)
    • Advanced Shell Scripting (BASH, Fish, ZSH,...)
    • Analysis Pipelines Workflows (Nextflow, SnakeMake,...)
  • Full Stack
    • Node.js, TypeScript, Ember, Angular, Express, MongoDB, SQL, HTML5, CSS3
  • DevOps
    • Docker, Singularity
    • Google Cloud, Azure, AWS
    • NixOS, Arch Linux, Ubuntu
    • Git, GitHub, GitLab
    • Unit Testing, Continuous Integration (TravisCI)
  • Exposure and interests
    • Rust, Swift

Communicating & Teaching (🇵🇹🇬🇧🇫🇷 speaker)

  • 2016-2017 | Awarded Mozilla Science Lab fellowship (one of four, out of 483 submissions) to travel around the world and champion Open Science through talks, workshops, and hackathons.
  • 2016-2018 | Mentored 3 Google Summer of Code students for the Open Bioinformatics Foundation to build genomic data analysis workflows.
  • 2014-2018 | Master's in Bioinformatics and R course instructor at Queen Mary, U. of London during PhD.
  • 2012 | Instructor and Content Developer for Python 101 Course at U. of Lisbon
  • Speaker at multiple international conferences, meetups and hackathons for Bioinformatics, Open Science, Reproducibility, and Node.js.

Education & Work Experience

Full CV @

Popular repositories

  1. Proxy to access resources that lack the Access-Control-Allow-Origin * header

    JavaScript 28 15

  2. A simple Heroku app template for deploying Dat

    JavaScript 16 8

  3. python101 Public archive

    Python 101 course slides

    Python 10 4

  4. My Dockerfiles. Trusted Builds also available in the Docker registry

    Shell 6

  5. gulp-reveal Public archive

    HTML to Reveal.js

    HTML 5 6

  6. cobig2 Public archive

    AngularJS app that uses many APIs. Used in the new CoBiG² website.

    CoffeeScript 2 3

179 contributions in the last year

Aug Sep Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Mon Wed Fri
Activity overview
Contributed to bmpvieira/bmpvieira, bmpvieira/, lifebit-ai/nextflow and 5 other repositories

Contribution activity

August 2022

Created 2 repositories
8 contributions in private repositories Aug 3 – Aug 11

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