/
pedigree_example.xml
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/
pedigree_example.xml
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<!DOCTYPE PEDIGREE SYSTEM "pedigree.dtd">
<PEDIGREE date="2001-06-19" comment="example pedigree">
<MARKER name="ALZAFF" type="disease" display_name="ALZAFF"
description="disease mkr ex" result_allele_count="1">
<LIAB_CLASS name="N10">
<PENETRANCE dom="0.0000" het="0.0000" rec="1.000" />
</LIAB_CLASS>
<LIAB_CLASS name="N20">
<PENETRANCE dom="0.0000" het="0.0000" rec="1.000" />
</LIAB_CLASS>
<LIAB_CLASS name="N30">
<PENETRANCE dom="0.0000" het="0.0000" rec="1.000" />
</LIAB_CLASS>
<LIAB_CLASS name="A">
<PENETRANCE dom="1.0000" het="0.0000" rec="0.000" />
</LIAB_CLASS>
</MARKER>
<MARKER name="D1S123" type="variation" display_name="D1S123"
description="variation mkr ex" result_allele_count="2"
chrom="1">
<UPSTREAMSEQ>AAAACCCCTTT</UPSTREAMSEQ>
<DNSTREAMSEQ>TGATTCATGG</DNSTREAMSEQ>
<MARKER_ALLELE allele="100" frequency="0.100" />
<MARKER_ALLELE allele="105" frequency="0.400" />
<MARKER_ALLELE allele="109" frequency="0.250" />
<MARKER_ALLELE allele="110" frequency="0.250" />
</MARKER>
<GROUP id="101" center="XXX" type="FAMILY"
description="example family">
<PERSON id="1" displayid="2000" father="0" mother="0"
gender="M">
<RESULT marker="D1S123">
<ALLELE>100</ALLELE>
<ALLELE>105</ALLELE>
</RESULT>
<RESULT marker="ADAFF">
<ALLELE>U</ALLELE>
</RESULT>
</PERSON>
<PERSON id="1" displayid="2000" father="0" mother="0"
gender="M">
<RESULT marker="D1S123">
<ALLELE>100</ALLELE>
<ALLELE>105</ALLELE>
</RESULT>
<RESULT marker="ADAFF">
<ALLELE>U</ALLELE>
</RESULT>
</PERSON>
<PERSON id="2" displayid="2001" father="0" mother="0"
gender="F">
<RESULT marker="ADAFF">
<ALLELE>U</ALLELE>
</RESULT>
</PERSON>
<PERSON id="3" displayid="1000" father="1" mother="2"
gender="F">
<RESULT marker="D1S123">
<ALLELE>105</ALLELE>
<ALLELE>109</ALLELE>
</RESULT>
<RESULT marker="ADAFF">
<ALLELE>U</ALLELE>
</RESULT>
</PERSON>
<PERSON id="4" displayid="1001" father="0" mother="0"
gender="M">
<RESULT marker="D1S123">
<ALLELE>110</ALLELE>
<ALLELE>100</ALLELE>
</RESULT>
<RESULT marker="ADAFF">
<ALLELE>U</ALLELE>
</RESULT>
</PERSON>
<PERSON id="5" displayid="0001" father="4" mother="3"
gender="F">
<RESULT marker="D1S123">
<ALLELE>110</ALLELE>
<ALLELE>109</ALLELE>
</RESULT>
<RESULT marker="ADAFF">
<ALLELE>A</ALLELE>
</RESULT>
</PERSON>
</GROUP>
</PEDIGREE>