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Add prefix metacyc.pathway #1012

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hrshdhgd opened this issue Dec 7, 2023 · 0 comments · Fixed by #1013
Closed

Add prefix metacyc.pathway #1012

hrshdhgd opened this issue Dec 7, 2023 · 0 comments · Fixed by #1013
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New Used in combination with prefix, metaprefix, or collection for new entries Prefix

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@hrshdhgd
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hrshdhgd commented Dec 7, 2023 •
edited by cthoyt

Prefix

metacyc.pathway

Name

Metabolic Encyclopedia for Pathway/Genome Databases

Homepage

https://metacyc.org

Source Code Repository

No response

Description

MetaCyc is a database of non-redundant, experimentally elucidated metabolic pathways and enzymes. It also contains reactions, chemical compounds, and genes. It stores predominantly qualitative information rather than quantitative data, although it does contain some quantitative data such as enzyme kinetics data. “MetaCyc” is pronounced “met-a-sike”. It sounds like “encyclopedia”.

A unique property of MetaCyc is that it is curated[def] from the scientific experimental literature according to an extensive process [4], such that:

  • 3,443​ ​ different organisms are represented, with the majority of pathways occurring in microorganisms and plants

  • 3,128​ ​ metabolic pathways are stored, with 18,819​ ​ enzymatic reactions and 76,283​ ​ associated literature citations

  • MetaCyc stores the full complement of reactions that have been assigned EC numbers by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB)

  • MetaCyc stores thousands of additional enzyme-catalyzed reactions that have not yet been assigned an EC number

License

No response

Publications

pubmed:31586394 | pubmed:23746312 | pubmed:21523460

Example Local Unique Identifier

12DICHLORETHDEG-PWY

Regular Expression Pattern for Local Unique Identifier

No response

URI Format String

https://metacyc.org/META/NEW-IMAGE?object=$1

Wikidata Property

No response

Contributor Name

Harshad Hegde

Contributor GitHub

hrshdhgd

Contributor ORCiD

0000-0002-2411-565X

Contributor Email

No response

Contact Name

No response

Contact ORCiD

No response

Contact GitHub

No response

Contact Email

No response

Additional Comments

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@hrshdhgd hrshdhgd added New Used in combination with prefix, metaprefix, or collection for new entries Prefix labels Dec 7, 2023
@hrshdhgd hrshdhgd mentioned this issue Dec 7, 2023
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@github-actions github-actions bot mentioned this issue Dec 7, 2023
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cthoyt added a commit that referenced this issue Dec 7, 2023
@github-actions @hrshdhgd @cthoyt
Add prefix: metacyc.pathway (#1013)
1366cfc 
Closes #1012, closes #1011

---------

Co-authored-by: hrshdhgd <hrshdhgd@users.noreply.github.com>
Co-authored-by: Charles Tapley Hoyt <cthoyt@gmail.com>
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Add prefix: metacyc.pathway biopragmatics/bioregistry
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