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Merge glygen into glytoucan #1109

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Merge glygen into glytoucan #1109

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bgyori
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@bgyori bgyori commented May 3, 2024

This PR merges glygen into glytoucan while preserving it as a synonym and as a provider for glytoucan IDs. Some issues with this: useful metadata about GlyGen gets lost, for instance its mapping to FairSharing and Integbio, and metadata on a resolver for UniProt IDs on GlyGen.

Fixes #1084

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codecov bot commented May 3, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 43.98%. Comparing base (6092b57) to head (2aeaba5).

Additional details and impacted files
@@           Coverage Diff           @@
##             main    #1109   +/-   ##
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  Coverage   43.98%   43.98%           
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  Files         123      123           
  Lines        8166     8166           
  Branches     1900     1900           
=======================================
  Hits         3592     3592           
  Misses       4369     4369           
  Partials      205      205           

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While this seems like the right thing to do, I would not merge this before getting consent from @jeet-vora..

There is also quite a bit of interesting curation here in this record that is lost now - It would be nice if there was a way to set a prefix to "obsolete" to not loose all this information (on the website this would display the metadata with a big warning linking to the replacement namespace). Future music I guess.

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bgyori commented May 7, 2024

Given that the Bioregistry primarily aims to curate identifier resources, and from that perspective, GlyGen really is just a provider, I think these changes make sense. The metadata (i.e., publications, maintainer, etc.) associated with the GlyGen entry is useful but not strictly from a prefix / identifier pattern / resolver URL perspective which again is the main focus here.

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bgyori commented May 11, 2024

Hello @jeet-vora, do you have any thoughts on this change?

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Merge resource GlyGen into GlyTouCan
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