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idoerg committed Feb 18, 2005
1 parent 43b350b commit 2800c6c
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Showing 5 changed files with 22 additions and 1,772 deletions.
4 changes: 2 additions & 2 deletions Bio/Blast/NCBIWWW.py
Expand Up @@ -315,7 +315,7 @@ def _scan_alignments(self, uhandle, consumer):


is_pairwise = is_masterslave = 0 is_pairwise = is_masterslave = 0
# Was line1, changed to line2. 16-feb-2005. Iddo # Was line1, changed to line2. 16-feb-2005. Iddo
# if string.find(line2, 'Alignments') >= 0: # if string.find(line1, 'Alignments') >= 0:
if string.find(line2, 'Alignments') >= 0: if string.find(line2, 'Alignments') >= 0:
is_pairwise = 1 is_pairwise = 1
elif line2[:10] == ' Database': elif line2[:10] == ' Database':
Expand All @@ -327,7 +327,7 @@ def _scan_alignments(self, uhandle, consumer):
elif line1[:5] == '<PRE>': elif line1[:5] == '<PRE>':
is_pairwise = 1 is_pairwise = 1
else: else:
raise SyntaxError, "Cannot resolve location at line:\n%s\n%s" % (line1, line2) raise SyntaxError, "Cannot resolve location at lines:\n%s\n%s" % (line1, line2)


if is_pairwise: if is_pairwise:
self._scan_pairwise_alignments(uhandle, consumer) self._scan_pairwise_alignments(uhandle, consumer)
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