Restored Bio::Fasta.parser for keeping compatibility, and added forgo…

…tten require.
bioruby · May 6, 2009 · 97b9284 · 97b9284
1 parent 3d3edc4
commit 97b9284
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diff --git a/lib/bio/appl/fasta.rb b/lib/bio/appl/fasta.rb
@@ -66,6 +66,15 @@ def format=(num)
   end
   attr_reader :format
 
+  # OBSOLETE. Does nothing and shows warning messages.
+  #
+  # Historically, selecting parser to use ('format6' or 'format10' were
+  # expected, but only 'format10' was available as a working parser).
+  #
+  def self.parser(parser)
+    warn 'Bio::Fasta.parser is obsoleted and will soon be removed.'
+  end
+
   # Returns a FASTA factory object (Bio::Fasta) to run FASTA search on
   # local computer.
   def self.local(program, db, option = '')

diff --git a/lib/bio/appl/fasta/format10.rb b/lib/bio/appl/fasta/format10.rb
@@ -8,6 +8,7 @@
 #
 
 require 'bio/appl/fasta'
+require 'bio/io/flatfile/splitter'
 
 module Bio
 class Fasta