chore: Updated Ontologies [skip ci]

Signed-off-by: BioSimulations-Daemon <biosimulationsdaemon@gmail.com>
biosimulations · Apr 28, 2024 · a734f06 · a734f06
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diff --git a/libs/ontology/sources/src/lib/kisao.json b/libs/ontology/sources/src/lib/kisao.json
@@ -6470,8 +6470,9 @@
   }, {
     "@id" : "_:b538",
     "@type" : "owl:Restriction",
-    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000105"
+    "owl:onClass" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000260",
+    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000259",
+    "owl:qualifiedCardinality" : "1"
   }, {
     "@id" : "_:b539",
     "@type" : "owl:AllDisjointClasses",
@@ -6483,13 +6484,12 @@
   }, {
     "@id" : "_:b540",
     "@type" : "owl:Restriction",
-    "owl:onClass" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000260",
-    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000259",
-    "owl:qualifiedCardinality" : "1"
+    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000102"
   }, {
     "@id" : "_:b541",
     "@type" : "owl:Restriction",
-    "owl:onClass" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000257",
+    "owl:onClass" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000254",
     "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000259",
     "owl:qualifiedCardinality" : "1"
   }, {
@@ -6512,12 +6512,13 @@
   }, {
     "@id" : "_:b546",
     "@type" : "owl:Restriction",
-    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000108"
+    "owl:onClass" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000258",
+    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000259",
+    "owl:qualifiedCardinality" : "1"
   }, {
     "@id" : "_:b547",
     "@type" : "owl:Restriction",
-    "owl:onClass" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000258",
+    "owl:onClass" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000257",
     "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000259",
     "owl:qualifiedCardinality" : "1"
   }, {
@@ -6527,9 +6528,8 @@
   }, {
     "@id" : "_:b549",
     "@type" : "owl:Restriction",
-    "owl:onClass" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000254",
-    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000259",
-    "owl:qualifiedCardinality" : "1"
+    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000108"
   }, {
     "@id" : "_:b55",
     "@type" : "owl:Restriction",
@@ -6539,7 +6539,7 @@
     "@id" : "_:b550",
     "@type" : "owl:Restriction",
     "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000102"
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000105"
   }, {
     "@id" : "_:b551",
     "@type" : "owl:AllDisjointClasses",
@@ -6562,7 +6562,7 @@
     "@id" : "_:b554",
     "@type" : "owl:Restriction",
     "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000107"
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000102"
   }, {
     "@id" : "_:b555",
     "@type" : "owl:AllDisjointClasses",
@@ -6575,17 +6575,17 @@
     "@id" : "_:b557",
     "@type" : "owl:Restriction",
     "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000105"
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000107"
   }, {
     "@id" : "_:b558",
     "@type" : "owl:Restriction",
     "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000237"
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000105"
   }, {
     "@id" : "_:b559",
     "@type" : "owl:Restriction",
     "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000102"
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000237"
   }, {
     "@id" : "_:b56",
     "@type" : "owl:Axiom",
@@ -6610,18 +6610,21 @@
     "rdfs:comment" : "EXACT",
     "owl:annotatedProperty" : "http://www.w3.org/2004/02/skos/core#altLabel",
     "owl:annotatedSource" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000058",
-    "http://www.w3.org/2002/07/owl#annotatedTarget" : "Green's function reaction dynamics"
+    "http://www.w3.org/2002/07/owl#annotatedTarget" : "GFRD"
   }, {
     "@id" : "_:b563",
     "@type" : "owl:AllDisjointClasses",
     "owl:members" : [ "http://www.biomodels.net/kisao/KISAO#KISAO_0000223", "http://www.biomodels.net/kisao/KISAO#KISAO_0000253", "http://www.biomodels.net/kisao/KISAO#KISAO_0000332", "http://www.biomodels.net/kisao/KISAO#KISAO_0000486" ]
   }, {
     "@id" : "_:b564",
     "@type" : "owl:Axiom",
-    "rdfs:comment" : "EXACT",
-    "owl:annotatedProperty" : "http://www.w3.org/2004/02/skos/core#altLabel",
+    "rdfs:comment" : "Van Zon JS, Ten Wolde PR. Green's-function reaction dynamics: A particle-based approach for simulating biochemical networks in time and space. Journal of Chemical Physics, Volume 123 (23) (2005).",
+    "owl:annotatedProperty" : "rdfs:seeAlso",
     "owl:annotatedSource" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000058",
-    "http://www.w3.org/2002/07/owl#annotatedTarget" : "GFRD"
+    "http://www.w3.org/2002/07/owl#annotatedTarget" : {
+      "@type" : "xsd:anyURI",
+      "@value" : "http://identifiers.org/doi/10.1063/1.2137716"
+    }
   }, {
     "@id" : "_:b565",
     "@type" : "owl:AllDisjointClasses",
@@ -6633,22 +6636,19 @@
   }, {
     "@id" : "_:b567",
     "@type" : "owl:Axiom",
-    "rdfs:comment" : "Van Zon JS, Ten Wolde PR. Green's-function reaction dynamics: A particle-based approach for simulating biochemical networks in time and space. Journal of Chemical Physics, Volume 123 (23) (2005).",
-    "owl:annotatedProperty" : "rdfs:seeAlso",
+    "rdfs:comment" : "EXACT",
+    "owl:annotatedProperty" : "http://www.w3.org/2004/02/skos/core#altLabel",
     "owl:annotatedSource" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000058",
-    "http://www.w3.org/2002/07/owl#annotatedTarget" : {
-      "@type" : "xsd:anyURI",
-      "@value" : "http://identifiers.org/doi/10.1063/1.2137716"
-    }
+    "http://www.w3.org/2002/07/owl#annotatedTarget" : "Green's function reaction dynamics"
   }, {
     "@id" : "_:b568",
     "@type" : "owl:AllDisjointClasses",
     "owl:members" : [ "http://www.biomodels.net/kisao/KISAO#KISAO_0000056", "http://www.biomodels.net/kisao/KISAO#KISAO_0000094", "http://www.biomodels.net/kisao/KISAO#KISAO_0000273", "http://www.biomodels.net/kisao/KISAO#KISAO_0000281", "http://www.biomodels.net/kisao/KISAO#KISAO_0000306", "http://www.biomodels.net/kisao/KISAO#KISAO_0000314", "http://www.biomodels.net/kisao/KISAO#KISAO_0000363", "http://www.biomodels.net/kisao/KISAO#KISAO_0000369", "http://www.biomodels.net/kisao/KISAO#KISAO_0000377", "http://www.biomodels.net/kisao/KISAO#KISAO_0000397", "http://www.biomodels.net/kisao/KISAO#KISAO_0000398", "http://www.biomodels.net/kisao/KISAO#KISAO_0000408", "http://www.biomodels.net/kisao/KISAO#KISAO_0000419", "http://www.biomodels.net/kisao/KISAO#KISAO_0000433", "http://www.biomodels.net/kisao/KISAO#KISAO_0000448", "http://www.biomodels.net/kisao/KISAO#KISAO_0000473" ]
   }, {
     "@id" : "_:b569",
     "@type" : "owl:Restriction",
-    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000275",
-    "owl:someValuesFrom" : "xsd:integer"
+    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000108"
   }, {
     "@id" : "_:b57",
     "@type" : "owl:Axiom",
@@ -6662,8 +6662,8 @@
   }, {
     "@id" : "_:b570",
     "@type" : "owl:Restriction",
-    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000108"
+    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000275",
+    "owl:someValuesFrom" : "xsd:integer"
   }, {
     "@id" : "_:b571",
     "@type" : "owl:Restriction",
@@ -6705,7 +6705,7 @@
     "@id" : "_:b576",
     "@type" : "owl:Restriction",
     "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000360",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000288"
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000364"
   }, {
     "@id" : "_:b577",
     "@type" : "owl:Axiom",
@@ -6716,13 +6716,13 @@
   }, {
     "@id" : "_:b578",
     "@type" : "owl:Restriction",
-    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000360",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000364"
+    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000239"
   }, {
     "@id" : "_:b579",
     "@type" : "owl:Restriction",
-    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000239"
+    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000360",
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000288"
   }, {
     "@id" : "_:b58",
     "@type" : "owl:Restriction",
@@ -6731,22 +6731,12 @@
   }, {
     "@id" : "_:b580",
     "@type" : "owl:Axiom",
-    "rdfs:comment" : "Hindmarsh AC. LSODE and LSODI, two new initial value ordinary differential equation solvers. SIGNUM Newsletter, Volume 15 (4), pages 10-11 (1980).",
-    "owl:annotatedProperty" : "rdfs:seeAlso",
-    "owl:annotatedSource" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000071",
-    "http://www.w3.org/2002/07/owl#annotatedTarget" : {
-      "@type" : "xsd:anyURI",
-      "@value" : "http://identifiers.org/doi/10.1145/1218052.1218054"
-    }
-  }, {
-    "@id" : "_:b581",
-    "@type" : "owl:Axiom",
     "rdfs:comment" : "EXACT",
     "owl:annotatedProperty" : "http://www.w3.org/2004/02/skos/core#altLabel",
     "owl:annotatedSource" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000071",
     "http://www.w3.org/2002/07/owl#annotatedTarget" : "Livermore solver for ordinary differential equations"
   }, {
-    "@id" : "_:b582",
+    "@id" : "_:b581",
     "@type" : "owl:Axiom",
     "rdfs:comment" : "Radhakrishnan K, Hindmarsh AC. Description and Use of LSODE, the Livermore Solver for Ordinary Differential Equations. Lawrence Livermore National Laboratory Report, Vol. UCRL-ID-113855 (1993).",
     "owl:annotatedProperty" : "rdfs:seeAlso",
@@ -6756,25 +6746,28 @@
       "@value" : "citeulike:1774586"
     }
   }, {
-    "@id" : "_:b583",
-    "@type" : "owl:Restriction",
-    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000359",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000095"
+    "@id" : "_:b582",
+    "@type" : "owl:Axiom",
+    "rdfs:comment" : "Hindmarsh AC. LSODE and LSODI, two new initial value ordinary differential equation solvers. SIGNUM Newsletter, Volume 15 (4), pages 10-11 (1980).",
+    "owl:annotatedProperty" : "rdfs:seeAlso",
+    "owl:annotatedSource" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000071",
+    "http://www.w3.org/2002/07/owl#annotatedTarget" : {
+      "@type" : "xsd:anyURI",
+      "@value" : "http://identifiers.org/doi/10.1145/1218052.1218054"
+    }
   }, {
-    "@id" : "_:b584",
+    "@id" : "_:b583",
     "@type" : "owl:Restriction",
     "owl:onClass" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000253",
     "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000259",
     "owl:qualifiedCardinality" : "1"
   }, {
-    "@id" : "_:b585",
-    "@type" : "owl:Axiom",
-    "rdfs:comment" : "EXACT",
-    "owl:annotatedProperty" : "http://www.w3.org/2004/02/skos/core#altLabel",
-    "owl:annotatedSource" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000074",
-    "http://www.w3.org/2002/07/owl#annotatedTarget" : "BtauL"
+    "@id" : "_:b584",
+    "@type" : "owl:Restriction",
+    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000359",
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000095"
   }, {
-    "@id" : "_:b586",
+    "@id" : "_:b585",
     "@type" : "owl:Axiom",
     "rdfs:comment" : "Marquez-Lago T., Burrage K. Binomial tau-leap spatial stochastic simulation algorithm for applications in chemical kinetics. The Journal of Chemical Physics, Vol. 127 (10) (2007).",
     "owl:annotatedProperty" : "rdfs:seeAlso",
@@ -6784,12 +6777,19 @@
       "@value" : "http://identifiers.org/doi/10.1063/1.2771548"
     }
   }, {
-    "@id" : "_:b587",
+    "@id" : "_:b586",
     "@type" : "owl:Axiom",
     "rdfs:comment" : "EXACT",
     "owl:annotatedProperty" : "http://www.w3.org/2004/02/skos/core#altLabel",
     "owl:annotatedSource" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000074",
     "http://www.w3.org/2002/07/owl#annotatedTarget" : "binomial tau-leap spatial stochastic simulation algorithm"
+  }, {
+    "@id" : "_:b587",
+    "@type" : "owl:Axiom",
+    "rdfs:comment" : "EXACT",
+    "owl:annotatedProperty" : "http://www.w3.org/2004/02/skos/core#altLabel",
+    "owl:annotatedSource" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000074",
+    "http://www.w3.org/2002/07/owl#annotatedTarget" : "BtauL"
   }, {
     "@id" : "_:b588",
     "@type" : "owl:Axiom",
@@ -6819,12 +6819,12 @@
     "@id" : "_:b590",
     "@type" : "owl:Restriction",
     "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000360",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000334"
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000029"
   }, {
     "@id" : "_:b591",
     "@type" : "owl:Restriction",
     "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000360",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000029"
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000334"
   }, {
     "@id" : "_:b592",
     "@type" : "owl:Axiom",
@@ -6838,7 +6838,7 @@
     "rdfs:comment" : "EXACT",
     "owl:annotatedProperty" : "http://www.w3.org/2004/02/skos/core#altLabel",
     "owl:annotatedSource" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000075",
-    "http://www.w3.org/2002/07/owl#annotatedTarget" : "GMP"
+    "http://www.w3.org/2002/07/owl#annotatedTarget" : "Gillespie's multi-particle method"
   }, {
     "@id" : "_:b594",
     "@type" : "owl:Axiom",
@@ -6855,23 +6855,16 @@
     "rdfs:comment" : "EXACT",
     "owl:annotatedProperty" : "http://www.w3.org/2004/02/skos/core#altLabel",
     "owl:annotatedSource" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000075",
-    "http://www.w3.org/2002/07/owl#annotatedTarget" : "Gillespie's multi-particle method"
+    "http://www.w3.org/2002/07/owl#annotatedTarget" : "GMP"
   }, {
     "@id" : "_:b596",
     "@type" : "owl:Axiom",
     "rdfs:comment" : "EXACT",
     "owl:annotatedProperty" : "http://www.w3.org/2004/02/skos/core#altLabel",
     "owl:annotatedSource" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000076",
-    "http://www.w3.org/2002/07/owl#annotatedTarget" : "reaction-diffusion stochastic simulation algorithm"
-  }, {
-    "@id" : "_:b597",
-    "@type" : "owl:Axiom",
-    "rdfs:comment" : "EXACT",
-    "owl:annotatedProperty" : "http://www.w3.org/2004/02/skos/core#altLabel",
-    "owl:annotatedSource" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000076",
     "http://www.w3.org/2002/07/owl#annotatedTarget" : "RD SSA"
   }, {
-    "@id" : "_:b598",
+    "@id" : "_:b597",
     "@type" : "owl:Axiom",
     "rdfs:comment" : "Stundzia AB, Lumsden CJ. Stochastic simulation of coupled reaction-diffusion processes. J Comput Phys, Vol. 127 (1), pages 196-207 (1996).",
     "owl:annotatedProperty" : "rdfs:seeAlso",
@@ -6880,6 +6873,13 @@
       "@type" : "xsd:anyURI",
       "@value" : "http://identifiers.org/doi/10.1006/jcph.1996.0168"
     }
+  }, {
+    "@id" : "_:b598",
+    "@type" : "owl:Axiom",
+    "rdfs:comment" : "EXACT",
+    "owl:annotatedProperty" : "http://www.w3.org/2004/02/skos/core#altLabel",
+    "owl:annotatedSource" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000076",
+    "http://www.w3.org/2002/07/owl#annotatedTarget" : "reaction-diffusion stochastic simulation algorithm"
   }, {
     "@id" : "_:b599",
     "@type" : "owl:Restriction",
@@ -6920,13 +6920,13 @@
   }, {
     "@id" : "_:b603",
     "@type" : "owl:Restriction",
-    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000359",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000039"
+    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000237"
   }, {
     "@id" : "_:b604",
     "@type" : "owl:Restriction",
-    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000237"
+    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000359",
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000039"
   }, {
     "@id" : "_:b605",
     "@type" : "owl:Axiom",
@@ -6945,14 +6945,14 @@
   }, {
     "@id" : "_:b607",
     "@type" : "owl:Restriction",
-    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
-    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000239"
-  }, {
-    "@id" : "_:b608",
-    "@type" : "owl:Restriction",
     "owl:onClass" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000249",
     "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000259",
     "owl:qualifiedCardinality" : "1"
+  }, {
+    "@id" : "_:b608",
+    "@type" : "owl:Restriction",
+    "owl:onProperty" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000245",
+    "owl:someValuesFrom" : "http://www.biomodels.net/kisao/KISAO#KISAO_0000239"
   }, {
     "@id" : "_:b609",
     "@type" : "owl:Axiom",