Merge branch 'dev' of ssh://github.com/reproducible-biomedical-modeli…

…ng/Biosimulations_COBRApy into dev
biosimulators · Dec 16, 2021 · 5f6367e · 5f6367e
2 parents 319e7b7 + 0bf30bb
commit 5f6367e
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diff --git a/docs/_static/basic.css b/docs/_static/basic.css
@@ -731,8 +731,9 @@ dl.glossary dt {
 
 .classifier:before {
     font-style: normal;
-    margin: 0.5em;
+    margin: 0 0.5em;
     content: ":";
+    display: inline-block;
 }
 
 abbr, acronym {

diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0.1.20',
+    VERSION: '0.1.21',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/docs/_static/searchtools.js b/docs/_static/searchtools.js
@@ -328,7 +328,9 @@ var Search = {
     var results = [];
 
     for (var prefix in objects) {
-      for (var name in objects[prefix]) {
+      for (var iMatch = 0; iMatch != objects[prefix].length; ++iMatch) {
+        var match = objects[prefix][iMatch];
+        var name = match[4];
         var fullname = (prefix ? prefix + '.' : '') + name;
         var fullnameLower = fullname.toLowerCase()
         if (fullnameLower.indexOf(object) > -1) {
@@ -342,7 +344,6 @@ var Search = {
           } else if (parts[parts.length - 1].indexOf(object) > -1) {
             score += Scorer.objPartialMatch;
           }
-          var match = objects[prefix][name];
           var objname = objnames[match[1]][2];
           var title = titles[match[0]];
           // If more than one term searched for, we require other words to be

diff --git a/docs/about.html b/docs/about.html
@@ -6,7 +6,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>About BioSimulators-COBRApy &#8212; BioSimulators-COBRApy 0.1.20 documentation</title>
+    <title>About BioSimulators-COBRApy &#8212; BioSimulators-COBRApy 0.1.21 documentation</title>
 
   <link href="_static/css/theme.css" rel="stylesheet">
   <link href="_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">

diff --git a/docs/genindex.html b/docs/genindex.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Index &#8212; BioSimulators-COBRApy 0.1.20 documentation</title>
+    <title>Index &#8212; BioSimulators-COBRApy 0.1.21 documentation</title>
 
   <link href="_static/css/theme.css" rel="stylesheet">
   <link href="_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">

diff --git a/docs/index.html b/docs/index.html
@@ -6,7 +6,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>BioSimulators-COBRApy documentation &#8212; BioSimulators-COBRApy 0.1.20 documentation</title>
+    <title>BioSimulators-COBRApy documentation &#8212; BioSimulators-COBRApy 0.1.21 documentation</title>
 
   <link href="_static/css/theme.css" rel="stylesheet">
   <link href="_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">

diff --git a/docs/installation.html b/docs/installation.html
@@ -6,7 +6,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>Installation instructions &#8212; BioSimulators-COBRApy 0.1.20 documentation</title>
+    <title>Installation instructions &#8212; BioSimulators-COBRApy 0.1.21 documentation</title>
 
   <link href="_static/css/theme.css" rel="stylesheet">
   <link href="_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">

diff --git a/docs/py-modindex.html b/docs/py-modindex.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Python Module Index &#8212; BioSimulators-COBRApy 0.1.20 documentation</title>
+    <title>Python Module Index &#8212; BioSimulators-COBRApy 0.1.21 documentation</title>
 
   <link href="_static/css/theme.css" rel="stylesheet">
   <link href="_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">

diff --git a/docs/search.html b/docs/search.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Search &#8212; BioSimulators-COBRApy 0.1.20 documentation</title>
+    <title>Search &#8212; BioSimulators-COBRApy 0.1.21 documentation</title>
 
   <link href="_static/css/theme.css" rel="stylesheet">
   <link href="_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">

diff --git a/docs/searchindex.js b/docs/searchindex.js