Initial commit.

.buildpacks

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+https://github.com/heroku/heroku-buildpack-ruby.git
+https://github.com/weibeld/heroku-buildpack-graphviz.git

.gemrc

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+gem: --no-ri --no-rdoc

.gitignore

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+# See https://help.github.com/articles/ignoring-files for more about ignoring files.
+#
+# If you find yourself ignoring temporary files generated by your text editor
+# or operating system, you probably want to add a global ignore instead:
+#   git config --global core.excludesfile '~/.gitignore_global'
+
+# Ignore bundler config.
+/.bundle
+
+# Ignore the default SQLite database.
+/db/*.sqlite3
+/db/*.sqlite3-journal
+
+# Ignore PostgreSQL dump files
+/db/*.dump
+
+# Ignore all logfiles and tempfiles.
+/log/*
+!/log/.keep
+/tmp
+
+# Ignore gems etc. if built in bundle
+/vendor/bundle
+
+# Ignore any PDFs
+*.pdf
+
+# Ignore custom wmake user file
+wmake.sh
+
+# Windows image file caches
+Thumbs.db
+ehthumbs.db
+
+# Ignore temporary files
+public/system/*
+
+tags
+*.orig
+*.swp
+
+# Ignore application configuration
+/config/application.yml

CONTRIBUTING.md

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+# Contributing to sciNote
+
+### TODO

Dockerfile

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+FROM rails:4.2.5
+MAINTAINER BioSistemika <info@biosistemika.com>
+
+# additional dependecies
+RUN apt-get update -qq && apt-get install -y default-jre-headless unison sudo --no-install-recommends && rm -rf /var/lib/apt/lists/*
+
+# heroku tools
+RUN wget -O- https://toolbelt.heroku.com/install-ubuntu.sh | sh
+
+# install gems
+COPY Gemfile* /tmp/
+WORKDIR /tmp
+RUN bundle install
+
+# create app directory
+ENV APP_HOME /usr/src/app
+RUN mkdir $APP_HOME
+WORKDIR $APP_HOME
+
+# container user
+RUN groupadd scinote
+RUN useradd -ms /bin/bash -g scinote scinote
+USER scinote
+
+CMD rails s -b 0.0.0.0

Gemfile

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+source 'https://rubygems.org'
+
+ruby '2.2.4'
+
+gem 'rails', '4.2.5'
+gem 'figaro'
+gem 'pg'
+gem 'devise'
+gem 'devise_invitable'
+gem 'bootstrap-sass', '~> 3.3.5'
+gem 'sass-rails', '~> 5.0'
+gem 'bootstrap_form'
+gem 'yomu'
+# JS datetime library, requirement of datetime picker
+gem 'momentjs-rails', '>= 2.9.0'
+# JS datetime picker
+gem 'bootstrap3-datetimepicker-rails', '~> 4.15.35'
+# Select elements for Bootstrap
+gem 'bootstrap-select-rails'
+gem 'uglifier', '>= 1.3.0'
+# jQuery & plugins
+gem 'jquery-turbolinks'
+gem 'jquery-rails'
+gem 'jquery-ui-rails'
+gem 'jquery-scrollto-rails'
+gem 'hammerjs-rails'
+gem 'introjs-rails' # Create quick tutorials
+gem 'js_cookie_rails' # Simple JS API for cookies
+gem 'spinjs-rails'
+
+gem 'underscore-rails'
+gem 'turbolinks'
+gem 'sdoc', '~> 0.4.0', group: :doc
+gem 'bcrypt', '~> 3.1.10'
+gem 'logging', '~> 2.0.0'
+gem 'aspector' # Aspect-oriented programming for Rails
+gem 'rgl' # Graph framework for project diagram calculations
+gem 'nested_form_fields'
+gem 'ajax-datatables-rails'
+gem 'commit_param_routing' # Enables different submit actions in the same form to route to different actions in controller
+gem 'kaminari'
+gem "i18n-js", ">= 3.0.0.rc11" # Localization in javascript files
+gem 'roo', '~> 2.1.0' # Spreadsheet parser
+gem 'wicked_pdf'
+gem 'wkhtmltopdf-binary'
+gem 'remotipart', '~> 1.2' # Async file uploads
+gem 'redcarpet' # Markdown parser
+gem 'faker' # Generate fake data
+
+gem 'paperclip', '~> 4.3' # File attachment, image attachment library
+gem 'aws-sdk', '~> 2.2.8'
+gem 'aws-sdk-v1'
+gem 'delayed_job_active_record'
+gem 'devise-async'
+
+group :development, :test do
+  gem 'byebug'
+  gem 'web-console', '~> 2.0'
+end
+
+group :production do
+  gem 'puma'
+  gem 'rails_12factor'
+  gem 'skylight'
+end
+
+# Windows does not include zoneinfo files, so bundle the tzinfo-data gem
+gem 'tzinfo-data', platforms: [:mingw, :mswin, :x64_mingw, :jruby]