Provide a high-level python library to aid in silico strain design process in metabolic engineering projects. The library provides a modular architecture that enables the efficient construction of custom analysis workflows.
This library dependes on
- cobrapy for constraint-based modeling
- optlang for heuristic optimization and mathematical programming
Computationally heavy methods have been parallelized and can be run on a clusters using the IPython parallelization framework (see example and documetnation for more details). The default fallback is python's multiprocessing library.