skip validation if md5sum is not available

biothings · Jul 30, 2021 · 6fa8937 · 6fa8937
1 parent 79f704b
commit 6fa8937
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/hub/dataload/sources/pubchem/pubchem_dump.py b/src/hub/dataload/sources/pubchem/pubchem_dump.py
@@ -63,8 +63,6 @@ def post_dump(self, *args, **kwargs):
         '''Validate downloaded files'''
         self.logger.debug("Start validating downloaded files...")
         cmd = shutil.which('md5sum')
-        if not cmd:
-            raise OSError('"md5sum" is not found in the PATH!')
         if cmd:
             old = os.path.abspath(os.curdir)
             os.chdir(self.new_data_folder)
@@ -81,3 +79,5 @@ def post_dump(self, *args, **kwargs):
                 self.logger.debug("All %s files are validated.", len(md5_files))
             finally:
                 os.chdir(old)
+        else:
+            self.logger.warning('"md5sum" is not found in the PATH! File validation is skipped.')