fix deprecated unigene (now as collection-only/dummy uploader)

src/hub/dataload/sources/entrez/__init__.py

@@ -5,5 +5,4 @@
 from .go_upload import EntrezGOUploader
 from .genomic_pos_upload import EntrezGenomicPosUploader
 from .retired_upload import EntrezRetiredUploader
-from .unigene_upload import EntrezUnigeneUploader
 from .refseq_upload import EntrezRefseqUploader

src/hub/dataload/sources/entrez/dump.py

@@ -37,7 +37,7 @@ def new_release_available(self):
     def create_todump_list(self, force=False):
         self.get_newest_info()
         for fn in ["gene_info.gz","gene2accession.gz","gene2refseq.gz",
-                "gene2unigene","gene2go.gz","gene_history.gz","gene2ensembl.gz"]:
+                   "gene2go.gz","gene_history.gz","gene2ensembl.gz"]:
             local_file = os.path.join(self.new_data_folder,fn)
             if force or not os.path.exists(local_file) or self.remote_is_better(fn,local_file) or self.new_release_available():
                 self.to_dump.append({"remote": fn, "local":local_file})

src/hub/dataload/sources/unigene/__init__.py

@@ -0,0 +1 @@
+from .unigene_upload import EntrezUnigeneUploader

src/hub/dataload/sources/entrez/unigene_upload.py → src/hub/dataload/sources/unigene/unigene_upload.py

@@ -1,17 +1,9 @@
-from .parser import Gene2UnigeneParser
 import biothings.hub.dataload.uploader as uploader
 
 
-class EntrezUnigeneUploader(uploader.MergerSourceUploader):
+class EntrezUnigeneUploader(uploader.DummySourceUploader):
 
     name = "entrez_unigene"
-    main_source = "entrez"
-
-    def load_data(self, data_folder):
-        self.parser = Gene2UnigeneParser(data_folder)
-        self.parser.set_all_species()
-        gene2unigene = self.parser.load()
-        return gene2unigene
 
     @classmethod
     def get_mapping(klass):