group tests

biothings · Jul 18, 2021 · 6357d51 · 6357d51
1 parent ee9e9c7
commit 6357d51
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Showing 5 changed files with 16 additions and 20 deletions.
diff --git a/src/tests/__init__.py b/src/tests/__init__.py
diff --git a/src/tests/app/ZC_TODO b/src/tests/app/ZC_TODO
@@ -0,0 +1 @@
+LOCAL APP TESTS GO HERE
diff --git a/src/tests/test_annotation.py → src/tests/data/test_annotation.py b/src/tests/test_annotation.py → src/tests/data/test_annotation.py
@@ -2,10 +2,11 @@
     MyVariant Data-Aware Tests
 '''
 
-from biothings.tests.web import BiothingsTestCase
+from biothings.tests.web import BiothingsWebTest
 
 
-class TestMyvariant(BiothingsTestCase):
+class TestMyvariant(BiothingsWebTest):
+    host = "myvariant.info"
 
     # override
     def query(self, *args, **kwargs):

diff --git a/src/tests/test_others.py → src/tests/data/test_others.py b/src/tests/test_others.py → src/tests/data/test_others.py
@@ -1,14 +1,11 @@
-'''
-    MyVariant Data-Aware Tests
-'''
-import os
-import time
+
 from pprint import pformat
 
-from biothings.tests.web import BiothingsTestCase
+from biothings.tests.web import BiothingsWebTest
 
 
-class TestMyvariant(BiothingsTestCase):
+class TestMyvariant(BiothingsWebTest):
+    host = "myvariant.info"
 
     def check_index_count(self, assembly):
         # when run individually
@@ -18,7 +15,7 @@ def check_index_count(self, assembly):
         meta = self.request(f"{assembly}/metadata").json()
         results = {}
         for src_name in meta["src"]:
-            #if src_name == "cadd":
+            # if src_name == "cadd":
             #    continue
             if src_name == "snpeff":
                 continue  # not a root src, counts always different
@@ -30,7 +27,8 @@ def check_index_count(self, assembly):
                     subsrc = subsrc.rstrip("s")  # plural in meta, singular in docs
                 meta_cnt = meta["src"][src_name]["stats"][stat]
                 try:
-                    res = self.request("query?q=_exists_:%s&size=0&assembly=%s" % (subsrc, assembly)).json()
+                    res = self.request("query?q=_exists_:%s&size=0&assembly=%s" %
+                                       (subsrc, assembly)).json()
                 except:
                     print(f'Query error for ("{subsrc}", "{assembly}")')
                     raise
@@ -45,7 +43,6 @@ def check_index_count(self, assembly):
                 errs[src]["diff"] = mc - ic
         assert len(errs) == 0, "Some counts don't match metadata:\n%s" % pformat(errs)
 
-
     def test_300_metadata(self):
         self.request("metadata").content
 

diff --git a/src/tests/test_query.py → src/tests/data/test_query.py b/src/tests/test_query.py → src/tests/data/test_query.py
@@ -1,13 +1,9 @@
-'''
-    MyVariant Data-Aware Tests
-'''
-import os
-from pprint import pformat
 
-from biothings.tests.web import BiothingsTestCase
+from biothings.tests.web import BiothingsWebTest
 
 
-class TestMyvariant(BiothingsTestCase):
+class TestMyvariant(BiothingsWebTest):
+    host = "myvariant.info"
 
     # override
     def query(self, *args, **kwargs):
@@ -66,7 +62,8 @@ def test_129_query(self):
         self.query(q='snpeff.ann.genename:BTK', morethan=8000)
 
     def test_130_query(self):
-        self.query(q='_exists_:wellderly AND cadd.polyphen.cat:possibly_damaging', fields='wellderly,cadd.polyphen')
+        self.query(q='_exists_:wellderly AND cadd.polyphen.cat:possibly_damaging',
+                   fields='wellderly,cadd.polyphen')
 
     def test_131_query_jsonld(self):
         pass  # feature removed in biothings 0.7.0