updated myvariant tests

biothings · Feb 6, 2021 · 6b22abf · 6b22abf
1 parent 8d11d8e
commit 6b22abf
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Showing 2 changed files with 11 additions and 3 deletions.
diff --git a/src/tests/test_others.py b/src/tests/test_others.py
@@ -18,6 +18,8 @@ def check_index_count(self, assembly):
         meta = self.request(f"{assembly}/metadata").json()
         results = {}
         for src_name in meta["src"]:
+            #if src_name == "cadd":
+            #    continue
             if src_name == "snpeff":
                 continue  # not a root src, counts always different
                 # TODO: that said, count in meta could be correct...
@@ -27,7 +29,11 @@ def check_index_count(self, assembly):
                 if subsrc in ("gnomad_genomes", "gnomad_exomes"):
                     subsrc = subsrc.rstrip("s")  # plural in meta, singular in docs
                 meta_cnt = meta["src"][src_name]["stats"][stat]
-                res = self.request("query?q=_exists_:%s&size=0&assembly=%s" % (subsrc, assembly)).json()
+                try:
+                    res = self.request("query?q=_exists_:%s&size=0&assembly=%s" % (subsrc, assembly)).json()
+                except:
+                    print(f'Query error for ("{subsrc}", "{assembly}")')
+                    raise
                 results[subsrc] = {"meta": meta_cnt, "index": res["total"]}
             #assert res["total"] == meta_cnt, "Count in metadata (%s) doesn't match count from query (%s) for datasource '%s'" % (meta_cnt,res["total"],subsrc)
         errs = {}

diff --git a/src/tests/test_query.py b/src/tests/test_query.py
@@ -82,10 +82,12 @@ def test_142_query_invalid(self):
         self.request("query")
 
     def test_143_clingen(self):
-        self.request("variant/CA9996207?assembly=hg38")
+        # self.request("variant/CA9996207?assembly=hg38")
+        self.request("variant/CA321211?assembly=hg38")
 
     def test_144_clingen(self):
-        self.request("hg38/CA9996207")
+        # self.request("hg38/CA9996207")
+        self.request("hg38/CA321211")
 
     def test_150_query_post(self):
         # /query via post