THIS WORKFLOW IS DEPRECATED. Please use the gatk-variantcalling workflow instead.
This repository contains the Biowdl workflow usable for generating a multisample vcf files.
Documentation for this workflow can be found here.
This workflow is part of Biowdl developed by the SASC team at Leiden University Medical Center.
For any question related to jointgenotyping, please use the github issue tracker or contact the SASC team directly at: sasc@lumc.nl.