Chemotaxis Models

Contains HMMER3 HMMs for classifying chemotaxis proteins into specific subfamilies.

Release 3.0

CheA

• chea-F1 F1 system-specific CheA
• chea-F2 F2 system-specific CheA
• chea-F3 F3 system-specific CheA
• chea-F4 F4 system-specific CheA
• chea-F5 F5 system-specific CheA
• chea-F6 F6 system-specific CheA
• chea-F7 F7 system-specific CheA
• chea-F8 F8 system-specific CheA
• chea-F9 F9 system-specific CheA
• chea-F10 F10 system-specific CheA
• chea-F11 F11 system-specific CheA
• chea-F12 F12 system-specific CheA
• chea-F13 F13 system-specific CheA
• chea-F14 F14 system-specific CheA
• chea-F15 F15 system-specific CheA
• chea-F16 F16 system-specific CheA
• chea-F17 F17 system-specific CheA
• chea-ACF ACF system-specific CheA
• chea-Tfp TFP system-specific CheA
• chea-Uncat Uncategorized CheA

CheB

• cheb-F1 F1 system-specific CheB
• cheb-F2 F2 system-specific CheB
• cheb-F3 F3 system-specific CheB
• cheb-F4 F4 system-specific CheB
• cheb-F5 F5 system-specific CheB
• cheb-F6 F6 system-specific CheB
• cheb-F7 F7 system-specific CheB
• cheb-F8 F8 system-specific CheB
• cheb-F9 F9 system-specific CheB
• cheb-F10 F10 system-specific CheB
• cheb-F11 F11 system-specific CheB
• cheb-F12 F12 system-specific CheB
• cheb-F13 F13 system-specific CheB
• cheb-F15 F15 system-specific CheB
• cheb-F16 F16 system-specific CheB
• cheb-F17 F17 system-specific CheB
• cheb-ACF ACF system-specific CheB
• cheb-MAC1 MAC1 system-specific CheB
• cheb-MAC2 MAC2 system-specific CheB
• cheb-Tfp Tfp system-specific CheB
• cheb-Uncat Uncat system-specific CheB

CheC

• chec-F1 F1 system-specific CheC
• chec-PAS PAS system-specific CheC

CheD

• ched-F1 F1 system-specific CheD
• ched-F7 F7 system-specific CheD
• ched-F8 F8 system-specific CheD
• ched-Uncat Uncat system-specific CheD

CheR

• cher-F1 F1 system-specific CheR
• cher-F2 F2 system-specific CheR
• cher-F3 F3 system-specific CheR
• cher-F4 F4 system-specific CheR
• cher-F5 F5 system-specific CheR
• cher-F6 F6 system-specific CheR
• cher-F7 F7 system-specific CheR
• cher-F8 F8 system-specific CheR
• cher-F9 F9 system-specific CheR
• cher-F10 F10 system-specific CheR
• cher-F11 F11 system-specific CheR
• cher-F12 F12 system-specific CheR
• cher-F13 F13 system-specific CheR
• cher-F14 F14 system-specific CheR
• cher-F15 F15 system-specific CheR
• cher-F16 F16 system-specific CheR
• cher-F17 F17 system-specific CheR
• cher-ACF ACF system-specific CheR
• cher-MAC1 MAC1 system-specific CheR
• cher-MAC2 MAC2 system-specific CheR
• cher-Tfp Tfp system-specific CheR
• cher-Uncat Uncat system-specific CheR

CheV

• chev-F1 F1 system-specific CheV
• chev-F3 F3 system-specific CheV
• chev-F4 F4 system-specific CheV
• chev-F6 F6 system-specific CheV
• chev-F7 F7 system-specific CheV
• chev-F8 F8 system-specific CheV
• chev-F12 F12 system-specific CheV
• chev-F14 F14 system-specific CheV
• chev-Uncat Uncat system-specific CheV

CheZ

• chez-F3 F3 system-specific CheZ
• chez-F4 F4 system-specific CheZ
• chez-F5 F5 system-specific CheZ
• chez-F6 F6 system-specific CheZ
• chez-F7 F7 system-specific CheZ
• chez-F14 F14 system-specific CheZ
• chez-F15 F15 system-specific CheZ
• chez-F17 F17 system-specific CheZ

MCP

• mcp-24H 24-heptad MCPsignal
• mcp-28H 28-heptad MCPsignal
• mcp-34H 34-heptad MCPsignal
• mcp-36H 36-heptad MCPsignal
• mcp-38H 38-heptad MCPsignal
• mcp-40H 40-heptad MCPsignal
• mcp-42H 42-heptad MCPsignal
• mcp-44H 44-heptad MCPsignal
• mcp-48H 48-heptad MCPsignal
• mcp-52H 52-heptad MCPsignal
• mcp-58H 58-heptad MCPsignal
• mcp-64H 64-heptad MCPsignal

References

• Alexander, Roger P., and Igor B. Zhulin. "Evolutionary genomics reveals conserved structural determinants of signaling and adaptation in microbial chemoreceptors." Proceedings of the National Academy of Sciences 104.8 (2007): 2885-2890.
• Wuichet, Kristin, and Igor B. Zhulin. "Origins and diversification of a complex signal transduction system in prokaryotes." Science Signaling 3.128 (2010): ra50.