GeoServer: enable metadata-plugin for modifying layer metadata, including bulk modifications #233

tlvu · 2022-01-25T16:46:12Z

See plugin documentation at https://docs.geoserver.org/2.19.x/en/user/community/metadata/index.html

Related to issue Ouranosinc/pavics-sdi#234

Add new "Metadata" tab in Layer Edit page:

…ding bulk modifications https://docs.geoserver.org/2.19.x/en/user/community/metadata/index.html Ouranosinc/pavics-sdi#234

crim-jenkins-bot · 2022-01-25T17:28:48Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/822/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : enable-metadata-plugin-for-geoserver
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-225.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/703/

NOTEBOOK TEST RESULTS

    
[2022-01-25T16:58:38.403Z] ============================= test session starts ==============================
[2022-01-25T16:58:38.403Z] platform linux -- Python 3.7.12, pytest-6.2.5, py-1.11.0, pluggy-1.0.0
[2022-01-25T16:58:38.404Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-01-25T16:58:38.404Z] plugins: anyio-3.3.4, dash-2.0.0, nbval-0.9.6, tornasync-0.6.0.post2
[2022-01-25T16:58:38.404Z] collected 238 items
[2022-01-25T16:58:38.404Z] 
[2022-01-25T16:58:46.654Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-01-25T16:59:32.096Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-01-25T16:59:43.276Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [ 10%]
[2022-01-25T16:59:53.382Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-01-25T16:59:55.807Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-01-25T17:09:59.614Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-01-25T17:10:17.745Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 22%]
[2022-01-25T17:10:54.218Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 24%]
[2022-01-25T17:10:54.791Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 25%]
[2022-01-25T17:11:01.751Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 28%]
[2022-01-25T17:11:09.794Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 30%]
[2022-01-25T17:15:36.465Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 36%]
[2022-01-25T17:16:27.949Z] ..............                                                           [ 42%]
[2022-01-25T17:16:36.510Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 44%]
[2022-01-25T17:16:38.719Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 47%]
[2022-01-25T17:17:07.209Z] .................                                                        [ 54%]
[2022-01-25T17:17:14.795Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 56%]
[2022-01-25T17:17:16.721Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-01-25T17:17:17.780Z] .FFFFFFFF.                                                               [ 61%]
[2022-01-25T17:17:30.678Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-01-25T17:17:40.324Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 68%]
[2022-01-25T17:18:22.606Z] finch-master/docs/source/notebooks/subset.ipynb ....................     [ 76%]
[2022-01-25T17:18:24.542Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 76%]
[2022-01-25T17:18:28.697Z] ......                                                                   [ 79%]
[2022-01-25T17:18:50.665Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 79%]
[2022-01-25T17:19:08.431Z] .............                                                            [ 85%]
[2022-01-25T17:19:18.574Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 85%]
[2022-01-25T17:20:34.975Z] ....s.                                                                   [ 88%]
[2022-01-25T17:20:49.897Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2022-01-25T17:20:57.286Z] ...                                                                      [ 89%]
[2022-01-25T17:21:23.859Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-01-25T17:23:30.815Z] ......                                                                   [ 92%]
[2022-01-25T17:23:34.947Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-01-25T17:27:00.369Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-01-25T17:27:00.370Z] 
[2022-01-25T17:27:00.370Z] =================================== FAILURES ===================================

huard

Ok for me but I'll leave the final word to @Zeitsperre.

tlvu · 2022-01-25T18:10:03Z

Ok for me but I'll leave the final word to @Zeitsperre.

Yes of course. This is so that I do not have valuable code layout around on my machine and risking to lose it if my disk is corrupted.

I understand we are still in exploratory phase and maybe this plugin do not even do what we need. @Zeitsperre can take as much time as he needs to test this.

Zeitsperre · 2022-01-25T18:23:56Z

@tlvu Thanks for this. I'll give it a look and see. I think when it comes to streaming metadata, this is likely our only option until the industry advances in adopting the existing metadata standards for geospatial data generally. The goal is to give this all a look this week!

tlvu · 2022-03-16T22:38:37Z

@Zeitsperre have you had the time to work on this? Do you still need my test server? See Ouranosinc/pavics-sdi#234 (comment)

crim-jenkins-bot · 2022-03-16T23:21:58Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/851/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : enable-metadata-plugin-for-geoserver
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-69.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/736/

NOTEBOOK TEST RESULTS

    
[2022-03-16T22:42:29.609Z] ============================= test session starts ==============================
[2022-03-16T22:42:29.609Z] platform linux -- Python 3.8.12, pytest-6.2.5, py-1.11.0, pluggy-1.0.0
[2022-03-16T22:42:29.609Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-03-16T22:42:29.609Z] plugins: anyio-3.5.0, dash-2.0.0, nbval-0.9.6, tornasync-0.6.0.post2
[2022-03-16T22:42:29.609Z] collected 244 items
[2022-03-16T22:42:29.609Z] 
[2022-03-16T22:42:37.343Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-03-16T22:43:02.815Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-03-16T22:43:12.898Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-03-16T22:43:20.242Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb .FFFFFFF       [ 13%]
[2022-03-16T22:43:23.081Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-03-16T22:45:05.896Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-03-16T22:45:13.495Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-03-16T22:45:28.654Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-03-16T22:45:56.821Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-03-16T22:45:58.207Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-03-16T22:47:08.471Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .FFFFFF            [ 29%]
[2022-03-16T22:47:09.328Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-03-16T22:50:06.571Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-03-16T22:51:09.480Z] ..............                                                           [ 43%]
[2022-03-16T22:51:16.970Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 45%]
[2022-03-16T22:51:18.871Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 48%]
[2022-03-16T22:52:20.628Z] .................                                                        [ 55%]
[2022-03-16T22:52:28.148Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 57%]
[2022-03-16T22:52:30.062Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-03-16T22:52:40.401Z] ..F....FF.                                                               [ 61%]
[2022-03-16T22:52:53.453Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-03-16T22:53:04.021Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 68%]
[2022-03-16T22:53:57.015Z] finch-master/docs/source/notebooks/subset.ipynb .....................    [ 77%]
[2022-03-16T22:53:57.015Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-03-16T22:54:01.223Z] ......                                                                   [ 79%]
[2022-03-16T22:54:19.351Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-03-16T22:54:34.624Z] .............                                                            [ 85%]
[2022-03-16T22:54:42.770Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-03-16T22:55:27.422Z] ....s.                                                                   [ 88%]
[2022-03-16T22:55:37.415Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2022-03-16T22:55:45.249Z] ...                                                                      [ 90%]
[2022-03-16T22:56:03.416Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-03-16T22:56:38.436Z] ......                                                                   [ 93%]
[2022-03-16T22:56:47.981Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-03-16T23:00:07.275Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-03-16T23:00:07.275Z] 
[2022-03-16T23:00:07.275Z] =================================== FAILURES ===================================

Zeitsperre · 2022-03-17T13:56:30Z

@Zeitsperre have you had the time to work on this? Do you still need my test server? See Ouranosinc/pavics-sdi#234 (comment)

@tlvu Yes, it would be convenient if you could keep that running. I'll aim to try it out this afternoon if possible!

tlvu · 2022-04-04T14:22:56Z

@Zeitsperre have you had the time to work on this? Do you still need my test server? See Ouranosinc/pavics-sdi#234 (comment)

@tlvu Yes, it would be convenient if you could keep that running. I'll aim to try it out this afternoon if possible!

@Zeitsperre Any update?

crim-jenkins-bot · 2022-07-21T13:49:48Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/954/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : enable-metadata-plugin-for-geoserver
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>

Zeitsperre · 2022-07-21T13:50:04Z

@aulemahal @cjauvin

I know that you two have been working on effective use of GeoServer metadata in the past few months. Do either of you see any benefits from this plugin?

cjauvin · 2022-07-21T14:01:51Z

It seems interesting but in our context (Portraits climatiques) the metadata have been kept at the NC file level. Maybe there would be a case for transfering them at the GS layer level, if we ever want to expose the WMS service in a more official way?

Zeitsperre · 2022-07-21T15:14:50Z

@tlvu Let's roll this plugin out. There are some use cases I can see for us even if we can't easily parse the metadata from a WFS/WMS/WCS stream.

…gin-for-geoserver

crim-jenkins-bot · 2022-08-11T20:52:44Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/958/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : enable-metadata-plugin-for-geoserver
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-10.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/782/

NOTEBOOK TEST RESULTS

    
[2022-08-11T20:17:50.766Z] ============================= test session starts ==============================
[2022-08-11T20:17:50.766Z] platform linux -- Python 3.8.13, pytest-7.1.2, pluggy-1.0.0
[2022-08-11T20:17:50.766Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-08-11T20:17:50.766Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-08-11T20:17:50.766Z] collected 246 items
[2022-08-11T20:17:50.766Z] 
[2022-08-11T20:17:59.451Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-08-11T20:18:48.962Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-08-11T20:18:58.696Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-08-11T20:19:11.136Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-08-11T20:19:13.440Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-08-11T20:20:44.658Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-08-11T20:21:10.645Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-08-11T20:21:28.747Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-08-11T20:21:45.099Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-08-11T20:21:46.487Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-08-11T20:21:51.253Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-08-11T20:22:01.390Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-08-11T20:25:46.609Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-08-11T20:26:51.621Z] ..............                                                           [ 43%]
[2022-08-11T20:27:01.117Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 44%]
[2022-08-11T20:27:03.695Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 47%]
[2022-08-11T20:27:34.704Z] .................                                                        [ 54%]
[2022-08-11T20:27:40.854Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 56%]
[2022-08-11T20:27:42.231Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-08-11T20:27:52.263Z] ..F....FF.                                                               [ 61%]
[2022-08-11T20:28:03.364Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-08-11T20:28:12.471Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 67%]
[2022-08-11T20:28:40.089Z] finch-master/docs/source/notebooks/subset.ipynb ....................ss.  [ 77%]
[2022-08-11T20:28:41.463Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-08-11T20:28:44.765Z] ......                                                                   [ 80%]
[2022-08-11T20:28:56.976Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-08-11T20:29:10.112Z] .............                                                            [ 85%]
[2022-08-11T20:29:18.229Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-08-11T20:30:09.826Z] ....s.                                                                   [ 88%]
[2022-08-11T20:30:22.037Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2022-08-11T20:30:27.273Z] ...                                                                      [ 90%]
[2022-08-11T20:30:49.220Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-08-11T20:31:14.575Z] ......                                                                   [ 93%]
[2022-08-11T20:31:19.731Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-08-11T20:34:44.370Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-08-11T20:34:44.370Z] 
[2022-08-11T20:34:44.370Z] =================================== FAILURES ===================================

…y for backward compat

crim-jenkins-bot · 2022-08-11T23:10:48Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/959/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : enable-metadata-plugin-for-geoserver
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-10.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/783/

NOTEBOOK TEST RESULTS

    
[2022-08-11T22:37:23.023Z] ============================= test session starts ==============================
[2022-08-11T22:37:23.023Z] platform linux -- Python 3.8.13, pytest-7.1.2, pluggy-1.0.0
[2022-08-11T22:37:23.023Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-08-11T22:37:23.023Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-08-11T22:37:23.023Z] collected 246 items
[2022-08-11T22:37:23.023Z] 
[2022-08-11T22:37:30.873Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-08-11T22:37:56.209Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-08-11T22:38:04.304Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-08-11T22:38:12.800Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-08-11T22:38:15.375Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-08-11T22:39:36.611Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-08-11T22:40:02.111Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-08-11T22:40:17.016Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-08-11T22:40:31.888Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-08-11T22:40:33.271Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-08-11T22:40:38.468Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-08-11T22:40:48.430Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-08-11T22:43:42.010Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-08-11T22:44:40.702Z] ..............                                                           [ 43%]
[2022-08-11T22:44:49.092Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 44%]
[2022-08-11T22:44:51.409Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 47%]
[2022-08-11T22:45:18.703Z] .................                                                        [ 54%]
[2022-08-11T22:45:23.215Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 56%]
[2022-08-11T22:45:24.604Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-08-11T22:45:35.007Z] ..F....FF.                                                               [ 61%]
[2022-08-11T22:45:47.103Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-08-11T22:45:56.493Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 67%]
[2022-08-11T22:46:24.995Z] finch-master/docs/source/notebooks/subset.ipynb ....................ss.  [ 77%]
[2022-08-11T22:46:26.382Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-08-11T22:46:29.458Z] ......                                                                   [ 80%]
[2022-08-11T22:46:41.688Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-08-11T22:46:55.892Z] .............                                                            [ 85%]
[2022-08-11T22:47:04.024Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-08-11T22:47:54.515Z] ....s.                                                                   [ 88%]
[2022-08-11T22:48:02.644Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2022-08-11T22:48:07.116Z] ...                                                                      [ 90%]
[2022-08-11T22:48:19.313Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-08-11T22:48:49.114Z] ......                                                                   [ 93%]
[2022-08-11T22:49:02.433Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-08-11T22:52:36.619Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-08-11T22:52:36.620Z] 
[2022-08-11T22:52:36.620Z] =================================== FAILURES ===================================

This reverts commit ef271f0. No need to do this, we download the jar at runtime, when the container starts.

crim-jenkins-bot · 2022-08-11T23:55:36Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/960/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : enable-metadata-plugin-for-geoserver
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-10.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/784/

NOTEBOOK TEST RESULTS

    
[2022-08-11T23:19:55.463Z] ============================= test session starts ==============================
[2022-08-11T23:19:55.463Z] platform linux -- Python 3.8.13, pytest-7.1.2, pluggy-1.0.0
[2022-08-11T23:19:55.463Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-08-11T23:19:55.463Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-08-11T23:19:55.463Z] collected 246 items
[2022-08-11T23:19:55.463Z] 
[2022-08-11T23:20:04.538Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-08-11T23:20:21.137Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-08-11T23:20:28.896Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-08-11T23:20:35.912Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-08-11T23:20:38.438Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-08-11T23:22:07.163Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-08-11T23:22:20.830Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-08-11T23:22:35.748Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-08-11T23:22:50.841Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-08-11T23:22:52.227Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-08-11T23:22:57.154Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-08-11T23:23:04.917Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-08-11T23:25:43.950Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-08-11T23:26:44.812Z] ..............                                                           [ 43%]
[2022-08-11T23:26:49.520Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 44%]
[2022-08-11T23:26:51.735Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 47%]
[2022-08-11T23:27:13.144Z] .................                                                        [ 54%]
[2022-08-11T23:27:19.071Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 56%]
[2022-08-11T23:27:20.457Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-08-11T23:27:30.762Z] ..F....FF.                                                               [ 61%]
[2022-08-11T23:27:42.667Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-08-11T23:27:51.682Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 67%]
[2022-08-11T23:28:18.056Z] finch-master/docs/source/notebooks/subset.ipynb ....................ss.  [ 77%]
[2022-08-11T23:28:19.436Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-08-11T23:28:22.500Z] ......                                                                   [ 80%]
[2022-08-11T23:28:37.403Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-08-11T23:28:48.241Z] .............                                                            [ 85%]
[2022-08-11T23:28:56.360Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-08-11T23:29:50.556Z] ....s.                                                                   [ 88%]
[2022-08-11T23:29:58.682Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2022-08-11T23:30:03.028Z] ...                                                                      [ 90%]
[2022-08-11T23:30:15.227Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-08-11T23:30:45.658Z] ......                                                                   [ 93%]
[2022-08-11T23:30:54.617Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-08-11T23:34:12.408Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-08-11T23:34:12.408Z] 
[2022-08-11T23:34:12.408Z] =================================== FAILURES ===================================

Altering image on startup is okay only for testing, not for production deployment.

crim-jenkins-bot · 2022-08-12T00:37:02Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/961/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : enable-metadata-plugin-for-geoserver
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-10.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/785/

NOTEBOOK TEST RESULTS

    
[2022-08-12T00:03:52.983Z] ============================= test session starts ==============================
[2022-08-12T00:03:52.983Z] platform linux -- Python 3.8.13, pytest-7.1.2, pluggy-1.0.0
[2022-08-12T00:03:52.983Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-08-12T00:03:52.983Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-08-12T00:03:52.983Z] collected 246 items
[2022-08-12T00:03:52.983Z] 
[2022-08-12T00:04:01.523Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-08-12T00:04:20.111Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-08-12T00:04:28.159Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-08-12T00:04:37.513Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-08-12T00:04:40.365Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-08-12T00:05:54.228Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-08-12T00:06:07.437Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-08-12T00:06:22.360Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-08-12T00:06:37.241Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-08-12T00:06:38.442Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-08-12T00:06:43.518Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-08-12T00:06:52.380Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-08-12T00:09:21.441Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-08-12T00:10:31.270Z] ..............                                                           [ 43%]
[2022-08-12T00:10:41.233Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 44%]
[2022-08-12T00:10:43.128Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 47%]
[2022-08-12T00:11:07.863Z] .................                                                        [ 54%]
[2022-08-12T00:11:12.544Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 56%]
[2022-08-12T00:11:13.936Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-08-12T00:11:24.608Z] ..F....FF.                                                               [ 61%]
[2022-08-12T00:11:36.546Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-08-12T00:11:46.776Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 67%]
[2022-08-12T00:12:13.493Z] finch-master/docs/source/notebooks/subset.ipynb ....................ss.  [ 77%]
[2022-08-12T00:12:14.867Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-08-12T00:12:18.204Z] ......                                                                   [ 80%]
[2022-08-12T00:12:40.261Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-08-12T00:12:54.840Z] .............                                                            [ 85%]
[2022-08-12T00:13:01.404Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-08-12T00:13:52.454Z] ....s.                                                                   [ 88%]
[2022-08-12T00:14:00.573Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2022-08-12T00:14:05.503Z] ...                                                                      [ 90%]
[2022-08-12T00:14:17.696Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-08-12T00:14:49.250Z] ......                                                                   [ 93%]
[2022-08-12T00:15:00.335Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-08-12T00:18:24.951Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-08-12T00:18:24.951Z] 
[2022-08-12T00:18:24.951Z] =================================== FAILURES ===================================

crim-jenkins-bot · 2022-08-12T00:59:35Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/962/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : enable-metadata-plugin-for-geoserver
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>

crim-jenkins-bot · 2022-08-12T01:00:18Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/963/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : enable-metadata-plugin-for-geoserver
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>

…n commit f3b9896 In PR #233, commit d1ecc63 as a temporary solution only, not needed with newer kartoza docker images.

- Delete unused Dockerfiles, fixes #349 and fixes #352 * birdhouse/docker/geoserver: not used since 3-4 years, replaced by https://github.com/kartoza/docker-geoserver * birdhouse/config/geoserver/Dockerfile: was introduced in commit f3b9896 (PR #233, merge commit d1ecc63) as a temporary solution only, not needed with newer kartoza docker images. - Move birdhouse/docker/solr to birdhouse/deprecated-components/solr/docker to group related files together. Solr has been deprecated since PR #311 (merge commit a8d3612).

geoserver: enable metadata-plugin for modifying layer metadata, inclu…

2783e0b

…ding bulk modifications https://docs.geoserver.org/2.19.x/en/user/community/metadata/index.html Ouranosinc/pavics-sdi#234

tlvu requested review from huard and Zeitsperre January 25, 2022 16:46

huard approved these changes Jan 25, 2022

View reviewed changes

Merge branch 'master' into enable-metadata-plugin-for-geoserver

6c5e88d

huard assigned tlvu Apr 4, 2022

Merge branch 'master' into enable-metadata-plugin-for-geoserver

f5e6cb7

Merge remote-tracking branch 'origin/master' into enable-metadata-plu…

0352036

…gin-for-geoserver

tlvu added 2 commits August 11, 2022 18:27

geoserver: .gitignore snakeyaml-1.30.jar

ef271f0

vagrant: allow writable extra folder mount, default is still read-onl…

3e41529

…y for backward compat

github-actions bot added the documentation Improvements or additions to documentation label Aug 11, 2022

Revert "geoserver: .gitignore snakeyaml-1.30.jar"

b26e1c2

This reverts commit ef271f0. No need to do this, we download the jar at runtime, when the container starts.

tlvu added 2 commits August 11, 2022 20:12

geoserver: do not alter image on startup, to keep reproducibility

f3b9896

Altering image on startup is okay only for testing, not for production deployment.

Bump version: 1.20.0 → 1.20.1

ff0e13c

github-actions bot added the ci/operations Continuous Integration components label Aug 12, 2022

tlvu merged commit d1ecc63 into master Aug 12, 2022

tlvu deleted the enable-metadata-plugin-for-geoserver branch August 12, 2022 00:35

tlvu added a commit that referenced this pull request Jul 12, 2023

Delete unused birdhouse/config/geoserver/Dockerfile: was introduced i…

2674949

…n commit f3b9896 In PR #233, commit d1ecc63 as a temporary solution only, not needed with newer kartoza docker images.

tlvu mentioned this pull request Jul 12, 2023

Remove unused geoserver dockerfiles #353

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GeoServer: enable metadata-plugin for modifying layer metadata, including bulk modifications #233

GeoServer: enable metadata-plugin for modifying layer metadata, including bulk modifications #233

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GeoServer: enable metadata-plugin for modifying layer metadata, including bulk modifications #233

GeoServer: enable metadata-plugin for modifying layer metadata, including bulk modifications #233

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E2E Test Results

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E2E Test Results

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