Merge pull request yeatmanlab#501 from 36000/nightly_4

Split off nightly 4 from nightly 3, nightly rests run python 3.8

.github/workflows/nightly2_test.yml

@@ -11,7 +11,7 @@ jobs:
     strategy:
       max-parallel: 4
       matrix:
-        python-version: [3.6, 3.7]
+        python-version: [3.6, 3.7, 3.8]
 
     steps:
     - name: Checkout repo

.github/workflows/nightly3_test.yml

@@ -11,7 +11,7 @@ jobs:
     strategy:
       max-parallel: 4
       matrix:
-        python-version: [3.6, 3.7]
+        python-version: [3.6, 3.7, 3.8]
 
     steps:
     - name: Checkout repo

.github/workflows/nightly4_test.yml

@@ -0,0 +1,33 @@
+name: Nightly test suite
+
+on:
+  schedule:
+    - cron: '0 8 * * *'  # every day at 1 AM, PST
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      max-parallel: 4
+      matrix:
+        python-version: [3.6, 3.7, 3.8]
+
+    steps:
+    - name: Checkout repo
+      uses: actions/checkout@v1
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v1
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install
+      run: |
+        python -m pip install --upgrade pip
+        pip install .[dev,fury,plotly]
+    - name: Lint
+      run: |
+        flake8 --ignore N802,N806,W503 --select W504 `find . -name \*.py | grep -v setup.py | grep -v version.py | grep -v __init__.py | grep -v /docs/`
+    - name: Test
+      run: |
+        export TEST_WITH_XVFB=true
+        cd && mkdir for_test && cd for_test && pytest --pyargs AFQ --cov-report term-missing --cov=AFQ -m "nightly4" --durations=0

.github/workflows/nightly_test.yml

@@ -11,7 +11,7 @@ jobs:
     strategy:
       max-parallel: 4
       matrix:
-        python-version: [3.6, 3.7]
+        python-version: [3.6, 3.7, 3.8]
 
     steps:
     - name: Checkout repo

.github/workflows/test.yml

@@ -28,4 +28,4 @@ jobs:
     - name: Test
       run: |
         export TEST_WITH_XVFB=true
-        cd && mkdir for_test && cd for_test && pytest --pyargs AFQ --cov-report term-missing --cov=AFQ -m "not nightly and not nightly2 and not nightly3" --durations=0
+        cd && mkdir for_test && cd for_test && pytest --pyargs AFQ --cov-report term-missing --cov=AFQ -m "not nightly and not nightly2 and not nightly3 and not nightly4" --durations=0

AFQ/tests/test_api.py

@@ -155,7 +155,7 @@ def create_dummy_bids_path(n_subjects, n_sessions):
     return bids_dir
 
 
-@pytest.mark.nightly3
+@pytest.mark.nightly4
 def test_AFQ_custom_tract():
     """
     Test whether AFQ can use tractography from
@@ -375,7 +375,7 @@ def test_AFQ_pft():
     my_afq.export_rois()
 
 
-@pytest.mark.nightly3
+@pytest.mark.nightly4
 def test_AFQ_custom_subject_reg():
     """
     Test custom subject registration using AFQ object