stepRNA is available for download at:
v1.b0 is the first version released to the public, v1.0.6 is the latest version.
stepRNA is licensed under the MIT license. See LICENSE file for details.
Please report any issues to the stepRNA GitHub page or via email:
- https://github.com/bmm514/stepRNA/issues
- benmurcott96@gmail.com or bmm41@bath.ac.uk (Ben Murcott)
- v.l.hunt@bath.ac.uk (Vicky Hunt)
Version 1.0.6 - 28 Feb, 2023
- Update to setup.py to include alive_progress
Version 1.0.5 - 7 Feb, 2022
- Progress bar added to cigar processing stage
- Full manual still to be added
Version 1.0.4 - 9 Apr, 2021
- Calcualtion of logodds and Zscores for overlaps
- Unaligned reads in bowtie alignment removed from BAM output
- Full manual still to be added
Version 1.0.3 - 8 Mar, 2021
- Updating header in passenger_number.csv to siRNA_sequence
- Full manual still to be added
Version 1.0.2 - 4 Mar, 2021
- Fixing upload issue from v1.0.1
- Full manual still to be added
Version 1.0.1 - 4 Mar, 2021
- Fixing a probelm with underhang length calculation
- Full manual still to be added
Version 1.0.0 - 3 Mar, 2021
- Version 1.0.0 official release
- Manuscript available: Murcott, Pawluk & Hunt (2021)
- README.md complete; Full manual still to be added
Version 1.b0 - 25 Feb, 2021
- First public release
- Caveats: Manual is still incomplete, untested on Windows
- Features such as log file outputs still to be finalised