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<!DOCTYPE html>
<head>
<meta charset="utf-8" />
<meta http-equiv="X-UA-Compatible" content="IE=edge,chrome=1">
<title>Crowdsourcing Genome Annotation</title>
<meta name="author" content="Bruno Vieira">
<link rel="stylesheet" href="reveal/css/reveal.min.css">
<link rel="stylesheet" href="theme/style.css">
</head>
<body>
<div class="reveal">
<div class="slides">
<section data-state=front>
<h1 id="crowdsourcing-genome-annotation">Crowdsourcing Genome Annotation</h1>
<p><a href="//bmpvieira.com/ccs14">bmpvieira.com/ccs14</a></p>
<p>Bruno Vieira | <a href="//twitter.com/bmpvieira">@bmpvieira</a></p>
<p>Queen Mary, University of London</p>
</section>
<section data-state=q>
<h2 id="what-is-genome-annotation-">What is genome annotation?</h2>
</section>
<section>
<h3 id="demo">Demo</h3>
<p><img src="img/afra-demo.mov.gif" alt="Demonstration of Afra"></p>
<p><a href="http://afra.sbcs.qmul.ac.uk">afra.sbcs.qmul.ac.uk</a></p>
</section>
<section data-state=title>
<h2 id="afra">Afra</h2>
<p>Web App to Crowdsource/Gamify Genome Annotation</p>
</section>
<section>
<h3 id="open-source">Open Source</h3>
<p><a href="//github.com/yeban/afra">github.com/yeban/afra</a></p>
<p><img src="//pbs.twimg.com/profile_images/3198248389/f829081d505783cc56e97b4df1e9e836.jpeg" alt="Anurag Priyam"></p>
<p>Anurag Priyam</p>
<p><a href="//twitter.com/yeban">@yeban</a></p>
</section>
<section>
<h3 id="webapollo">WebApollo</h3>
<p><img height="400px" src="http://apollo.berkeleybop.org/sites/genomearchitect.berkeleybop.org/files/u2/Web-Apollo-home-image5.png" alt="WebApollo" /></p>
<p><a href="//github.com/gmod/apollo">github.com/gmod/apollo</a></p>
<p><a href="//apollo.berkeleybop.org">apollo.berkeleybop.org</a></p>
</section>
<section>
<h3 id="software-stack">Software Stack</h3>
<p><img src="https://raw.github.com/bmpvieira/phd-report-2months/master/img/afra_stack.png?token=263386__eyJzY29wZSI6IlJhd0Jsb2I6Ym1wdmllaXJhL3BoZC1yZXBvcnQtMm1vbnRocy9tYXN0ZXIvaW1nL2FmcmFfc3RhY2sucG5nIiwiZXhwaXJlcyI6MTM5MzU5ODY1MH0%3D--f7bcef22144f85cedf1f6930e5d33b9379447d63" alt="Afra Stack"></p>
</section>
<section>
<h3 id="bionode">Bionode</h3>
<p><img src="img/bionode.png" alt="bionode"></p>
<p><a href="//github.com/bionode/bionode">github.com/bionode/bionode</a></p>
</section>
<section>
<h3 id="gamify">Gamify</h3>
<ul>
<li>Scores</li>
<li>Open Badges</li>
<li>Certificates of Expertise</li>
</ul>
</section>
<section>
<h3 id="machine-learning">Machine Learning</h3>
<p>Use data generated by users to improve gene prediction models</p>
</section>
<section>
<h3 id="thanks-questions-">Thanks! Questions?</h3>
<p><img height="140px" src="https://pbs.twimg.com/profile_images/1901417721/bmpvieira.png" alt"Bruno Vieira"/>
Bruno Vieira
<a href="//twitter.com/bmpvieira">@bmpvieira</a></p>
<p><img height="140px" src="https://pbs.twimg.com/profile_images/3198248389/f829081d505783cc56e97b4df1e9e836.jpeg" alt"Bruno Vieira" />
Anurag Priyam
<a href="//twitter.com/yeban">@yeban</a></p>
<p><img height="140px" src="https://pbs.twimg.com/profile_images/96659008/DSC04303.jpg" alt"Bruno Vieira" />
Yannick Wurm
<a href="//twitter.com/yannick__">@yannick__</a></p>
<p><a href="//bmpvieira.com/ccs14">bmpvieira.com/ccs14</a></p>
<p><small>
© 2014 <a href="//bmpvieira.com">Bruno Vieira</a> <a href="//creativecommons.org/licenses/by/4.0/deed.en_US">CC-BY 4.0</a>
</small></p>
</section>
</div>
</div>
<script src="js/jquery.js"></script>
<!-- reveal -->
<script src="reveal/lib/js/head.min.js"></script>
<script src="reveal/js/reveal.min.js"></script>
<script>
Reveal.initialize({
// Display controls in the bottom right corner
controls: false,
// Display a presentation progress bar
progress: true,
// Push each slide change to the browser history
history: true,
// Enable keyboard shortcuts for navigation
keyboard: true,
// Enable the slide overview mode
overview: true,
// Vertical centering of slides
center: false,
// Loop the presentation
loop: false,
// Change the presentation direction to be RTL
rtl: false,
// Number of milliseconds between automatically proceeding to the
// next slide, disabled when set to 0, this value can be overwritten
// by using a data-autoslide attribute on your slides
autoSlide: 0,
// Enable slide navigation via mouse wheel
mouseWheel: false,
// Apply a 3D roll to links on hover
rollingLinks: false,
// Transition style
transition: 'linear', // default/cube/page/concave/zoom/linear/fade/none
dependencies: [
// Cross-browser shim that fully implements classList - https://github.com/eligrey/classList.js/
{ src: 'reveal/lib/js/classList.js', condition: function() { return !document.body.classList; } },
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{ src: 'reveal/plugin/markdown/marked.js', condition: function() { return !!document.querySelector( '[data-markdown]' ); } },
{ src: 'reveal/plugin/markdown/markdown.js', condition: function() { return !!document.querySelector( '[data-markdown]' ); }, callback: function() { baconDemo() } },
// Syntareveal/x highlight for <code> elements
{ src: 'reveal/plugin/highlight/highlight.js', async: true, callback: function() { hljs.initHighlightingOnLoad(); } },
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// Remotreveal/e control your reveal.js presentation using a touch device
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</body>