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main.py
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main.py
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# -*- coding: utf-8 -*-
from core import run_timMRD
def main(args):
tis_name = args.tis_name
pla_name = args.pla_name
methyl_file = args.methyl_file
baseline_file = args.baseline_file
output_dir = args.output_dir
r_home = args.r_home
run_timMRD(tis_name, pla_name, methyl_file, baseline_file, output_dir, r_home)
if __name__ == '__main__':
import argparse
parser = argparse.ArgumentParser()
parser.add_argument("--tis_name", action="store", required=True)
parser.add_argument("--pla_name", action="store", required=True)
parser.add_argument("--methyl_file", action="store", required=True)
parser.add_argument("--baseline_file", action="store", required=True)
parser.add_argument("--output_dir", action="store", required=True)
parser.add_argument("--r_home", action="store", required=True)
args = parser.parse_args()
main(args)