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    <h1>EIGENSTRAT data constructor</h1>
    <small class="dont-index">Source: <a href='https://github.com/bodkan/admixr/blob/master/R/eigenstrat.R'><code>R/eigenstrat.R</code></a></small>
    <div class="hidden name"><code>eigenstrat.Rd</code></div>
    </div>

    <div class="ref-description">
    <p>This function creates an instance of the EIGENSTRAT S3 class, which
encapsulates all paths to data files required for an ADMIXTOOLS analysis.</p>
    </div>

    <pre class="usage"><span class='fu'>eigenstrat</span>(<span class='kw'>prefix</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='kw'>ind</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='kw'>snp</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='kw'>geno</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='kw'>exclude</span> <span class='kw'>=</span> <span class='kw'>NULL</span>)</pre>

    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
    <table class="ref-arguments">
    <colgroup><col class="name" /><col class="desc" /></colgroup>
    <tr>
      <th>prefix</th>
      <td><p>Shared path to an EIGENSTRAT trio (set of ind/snp/geno files).</p></td>
    </tr>
    <tr>
      <th>ind, snp, geno</th>
      <td><p>Paths to individual EIGENSTRAT components.</p></td>
    </tr>
    <tr>
      <th>exclude</th>
      <td><p>Pre-defined snp file with excluded sites.</p></td>
    </tr>
    </table>

    <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>

    <p>S3 object of the EIGENSTRAT class.</p>

    <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
    <pre class="examples"><div class='input'><span class='co'># download an example genomic data and get the path prefix to the</span>
<span class='co'># trio of snp/geno/ind files in an EIGENSTRAT format</span>
<span class='no'>prefix</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='download_data.html'>download_data</a></span>(<span class='kw'>dirname</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/tempfile.html'>tempdir</a></span>())

<span class='co'># wrap the trio of snp/geno/ind files in an object of the class</span>
<span class='co'># EIGENSTRAT</span>
<span class='no'>snps</span> <span class='kw'>&lt;-</span> <span class='fu'>eigenstrat</span>(<span class='no'>prefix</span>)</div></pre>
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