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start to modularize coordinate systems and transforms schemas
* reference in image schema
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,3 @@ | ||
| { | ||
| "schema": "schemas/coordinate_transforms.schema" | ||
| "schema": "schemas/coordinate_systems_and_transforms.schema" | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,3 @@ | ||
| { | ||
| "schema": "schemas/coordinate_transforms.schema" | ||
| "schema": "schemas/coordinate_systems_and_transforms.schema" | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,45 @@ | ||
| { | ||
| "$schema": "https://json-schema.org/draft/2020-12/schema", | ||
| "$id": "https://ngff.openmicroscopy.org/latest/schemas/coordinate_systems_and_transforms.schema", | ||
| "title": "NGFF Coordinate Systems and Transforms", | ||
| "description": "Coordinate Systems and transforms for OME-NGFF", | ||
| "type": "object", | ||
| "properties": { | ||
| "coordinateSystems": { | ||
| "$ref": "coordinate_systems.schema" | ||
| }, | ||
| "coordinateTransformations": { | ||
| "$ref": "coordinate_transformation.schema" | ||
| }, | ||
| "arrayCoordinateSystem": { | ||
| "type": "object", | ||
| "properties": { | ||
| "name": { | ||
| "type": "string", | ||
| "description": "Name of coordinate space" | ||
| }, | ||
| "axes": { | ||
| "allOf": [ | ||
| { | ||
| "$ref": "axes.schema" | ||
| }, | ||
| { | ||
| "type": "array", | ||
| "items": { | ||
| "type": "object", | ||
| "properties": { | ||
| "type": { | ||
| "const": "array" | ||
| } | ||
| } | ||
| } | ||
| } | ||
| ] | ||
| } | ||
| }, | ||
| "required": [ | ||
| "axes" | ||
| ] | ||
| } | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,343 @@ | ||
| { | ||
| "$schema": "https://json-schema.org/draft/2020-12/schema", | ||
| "$id": "https://ngff.openmicroscopy.org/latest/schemas/coordinate_transformation.schema", | ||
| "title": "NGFF Coordinate Systems and Transforms", | ||
| "description": "Coordinate Systems and transforms for OME-NGFF", | ||
| "type": "array", | ||
| "uniqueItems": true, | ||
| "items": { | ||
| "allOf": [ | ||
| { | ||
| "$ref": "#/$defs/coordinateTransformation" | ||
| }, | ||
| { | ||
| "type": "object", | ||
| "properties": { | ||
| "input": { | ||
| "type": "string" | ||
| }, | ||
| "output": { | ||
| "type": "string" | ||
| } | ||
| }, | ||
| "required": [ | ||
| "input", | ||
| "output" | ||
| ] | ||
| } | ||
| ] | ||
| }, | ||
| "$defs": { | ||
| "path_w_url": { | ||
| "description": "Path specification. Schema local solution until https://github.com/ome/ngff/issues/144 is resolved.", | ||
| "type": "object", | ||
| "properties": { | ||
| "path": { | ||
| "type": "string" | ||
| }, | ||
| "url": { | ||
| "type": "string", | ||
| "format": "uri" | ||
| } | ||
| }, | ||
| "required": [ | ||
| "path" | ||
| ] | ||
| }, | ||
| "coordinateTransformation": { | ||
| "description": "OME-NGFF coordinate transformation.", | ||
| "allOf": [ | ||
| { | ||
| "type": "object", | ||
| "properties": { | ||
| "name": { | ||
| "type": "string" | ||
| }, | ||
| "type": { | ||
| "type": "string" | ||
| } | ||
| }, | ||
| "required": [ | ||
| "type" | ||
| ] | ||
| }, | ||
| { | ||
| "oneOf": [ | ||
| { | ||
| "$ref": "#/$defs/identity" | ||
| }, | ||
| { | ||
| "$ref": "#/$defs/mapAxis" | ||
| }, | ||
| { | ||
| "$ref": "#/$defs/scale" | ||
| }, | ||
| { | ||
| "$ref": "#/$defs/translation" | ||
| }, | ||
| { | ||
| "$ref": "#/$defs/affine" | ||
| }, | ||
| { | ||
| "$ref": "#/$defs/rotation" | ||
| }, | ||
| { | ||
| "$ref": "#/$defs/inverseOf" | ||
| }, | ||
| { | ||
| "$ref": "#/$defs/bijection" | ||
| }, | ||
| { | ||
| "$ref": "#/$defs/sequence" | ||
| }, | ||
| { | ||
| "$ref": "#/$defs/byDimension" | ||
| }, | ||
| { | ||
| "$ref": "#/$defs/displacements" | ||
| }, | ||
| { | ||
| "$ref": "#/$defs/coordinates" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| }, | ||
| "byDimensionTransformation": { | ||
| "type": "object", | ||
| "description": "Transformation used inside a byDimension transformation", | ||
| "allOf": [ | ||
| { "$ref": "#/$defs/coordinateTransformation" }, | ||
| { | ||
| "properties": { | ||
| "input": { | ||
| "type": "array", | ||
| "items": { | ||
| "type": "string" | ||
| } | ||
| }, | ||
| "output": { | ||
| "type": "array", | ||
| "items": { | ||
| "type": "string" | ||
| } | ||
| } | ||
| } | ||
| } | ||
| ], | ||
| "required": ["input", "output"] | ||
| }, | ||
| "identity": { | ||
| "type": "object", | ||
| "properties": { | ||
| "type": { | ||
| "const": "identity" | ||
| } | ||
| } | ||
| }, | ||
| "mapAxis": { | ||
| "type": "object", | ||
| "description": "Permute axes by name", | ||
| "properties": { | ||
| "type": { | ||
| "const": "mapAxis" | ||
| }, | ||
| "mapAxis": { | ||
| "type": "object", | ||
| "patternProperties": { | ||
| ".*": { | ||
| "type": "string" | ||
| } | ||
| } | ||
| }, | ||
| "required": [ | ||
| "mapAxis" | ||
| ] | ||
| } | ||
| }, | ||
| "scale": { | ||
| "type": "object", | ||
| "properties": { | ||
| "type": { | ||
| "const": "scale" | ||
| } | ||
| }, | ||
| "oneOf": [ | ||
| { | ||
| "$ref": "#/$defs/path_w_url" | ||
| }, | ||
| { | ||
| "properties": { | ||
| "scale": { | ||
| "type": "array", | ||
| "items": { | ||
| "type": "number", | ||
| "exclusiveMinimum": 0 | ||
| } | ||
| } | ||
| }, | ||
| "required": [ | ||
| "scale" | ||
| ] | ||
| } | ||
| ] | ||
| }, | ||
| "translation": { | ||
| "type": "object", | ||
| "properties": { | ||
| "type": { | ||
| "const": "translation" | ||
| } | ||
| }, | ||
| "oneOf": [ | ||
| { | ||
| "$ref": "#/$defs/path_w_url" | ||
| }, | ||
| { | ||
| "properties": { | ||
| "translation": { | ||
| "type": "array", | ||
| "items": { | ||
| "type": "number" | ||
| } | ||
| } | ||
| }, | ||
| "required": [ | ||
| "translation" | ||
| ] | ||
| } | ||
| ] | ||
| }, | ||
| "mtxFlatOrNested" : { | ||
| "type": "array", | ||
| "oneOf": [ | ||
| { | ||
| "items": { "type": "number" } | ||
| }, | ||
| { | ||
| "items": { | ||
| "type": "array", | ||
| "items" : { "type" : "number" } | ||
| } | ||
| } | ||
| ] | ||
| }, | ||
| "affine": { | ||
| "type": "object", | ||
| "properties": { | ||
| "type": { | ||
| "const": "affine" | ||
| } | ||
| }, | ||
| "oneOf": [ | ||
| { | ||
| "$ref": "#/$defs/path_w_url" | ||
| }, | ||
| { | ||
| "properties": { | ||
| "affine": { | ||
| "$ref": "#/$defs/mtxFlatOrNested" | ||
| }, | ||
| "required": [ | ||
| "affine" | ||
| ] | ||
| } | ||
| } | ||
| ] | ||
| }, | ||
| "rotation": { | ||
| "type": "object", | ||
| "properties": { | ||
| "type": { | ||
| "const": "rotation" | ||
| } | ||
| }, | ||
| "oneOf": [ | ||
| { | ||
| "$ref": "#/$defs/path_w_url" | ||
| }, | ||
| { | ||
| "properties": { | ||
| "rotation": { | ||
| "type": "array", | ||
| "items": { | ||
| "type": "number" | ||
| } | ||
| }, | ||
| "required": [ | ||
| "rotation" | ||
| ] | ||
| } | ||
| } | ||
| ] | ||
| }, | ||
| "inverseOf": { | ||
| "type": "object", | ||
| "properties": { | ||
| "type": { | ||
| "const": "inverseOf" | ||
| }, | ||
| "transformation": { | ||
| "$ref": "#/$defs/coordinateTransformation" | ||
| } | ||
| }, | ||
| "required": [ | ||
| "transformation" | ||
| ] | ||
| }, | ||
| "bijection": { | ||
| "type": "object", | ||
| "properties": { | ||
| "type": { | ||
| "const": "bijection" | ||
| }, | ||
| "forward": { | ||
| "$ref": "#/$defs/coordinateTransformation" | ||
| }, | ||
| "inverse": { | ||
| "$ref": "#/$defs/coordinateTransformation" | ||
| } | ||
| }, | ||
| "required": [ | ||
| "forward", "inverse" | ||
| ] | ||
| }, | ||
| "sequence": { | ||
| "description": "A sequence of transformations", | ||
| "type": "object", | ||
| "properties": { | ||
| "type": { "const": "sequence" }, | ||
| "transformations": { | ||
| "type": "array", | ||
| "items": { | ||
| "$ref": "#/$defs/coordinateTransformation" | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| "byDimension": { | ||
| "type": "object", | ||
| "properties": { | ||
| "type": { "const": "byDimension" }, | ||
| "transformations": { | ||
| "type": "array", | ||
| "items": { | ||
| "$ref": "#/$defs/byDimensionTransformation" | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| "displacements": { | ||
| "type": "object", | ||
| "properties": { | ||
| "type": { "const": "displacements" } | ||
| } | ||
| }, | ||
| "coordinates": { | ||
| "type": "object", | ||
| "properties": { | ||
| "type": { "const": "coordinates" } | ||
| } | ||
| } | ||
| } | ||
| } |
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