Latest Bokeh 1.2.0 do not work with latest JupyterLab 2.0.1 #93
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@tlogan2000 FYI. |
tlvu
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Mar 9, 2020
See issue bokeh/jupyter_bokeh#93. There was no newer release on Pypi either so no other choices but to remove bokeh while waiting for bokeh dev to release a new version compatible with JupyterLab 2.0.1 and newer.
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@bryevdv Opps sorry. Any guesstimate when there will be a new bokeh release compatible with new jupyterlab? |
tlvu
added a commit
to Ouranosinc/PAVICS-e2e-workflow-tests
that referenced
this issue
Mar 9, 2020
See issue bokeh/jupyter_bokeh#93. There was no newer release on Pypi either so no other choices but to remove bokeh while waiting for bokeh dev to release a new version compatible with JupyterLab 2.0.1 and newer.
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@tlvu As I mentioned above there will be an updated release of the extension in the next week or so (the extension has the issue, not bokeh itself) |
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As an aside I'll just say it's truly unfortunate that the PhosphorJS creator decided to throw a fit and generate so much useless and unnecessary work for dozens of projects and maintainers, but we are doing the best we can to respond as quickly as we can. |
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@bryevdv thanks, much appreciated the effort. |
tlvu
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Mar 10, 2020
…tebooks docker: add regionmask and salem for Era5 Raven notebooks, removed jupyter_bokeh jupyter_bokeh (the extension, not the package) was removed due to this issue bokeh/jupyter_bokeh#93 Era5 Raven notebook PR: Ouranosinc/raven#200 Noticeable rather large Jupyter env changes: ```diff < - birdy=v0.6.5=py_0 > - birdy=v0.6.6=py_0 < - bokeh=1.4.0=py36_0 > - bokeh==2.0.0 # from pip recursive dependencies (we get newer version by not explicitly get from conda !) < - esgf-compute-api=2.2.1=py_2 > - esgf-compute-api=2.2.3=py_0 < - jupyterlab=1.2.5=py_0 > - jupyterlab=2.0.1=py_0 < - owslib=0.19.0=py_2 > - owslib=0.19.1=py_0 < - pandas=0.25.3=py36hb3f55d8_0 > - pandas=1.0.1=py37hb3f55d8_0 < - python=3.6.7=h357f687_1006 > - python=3.7.6=h357f687_4_cpython > - regionmask=0.5.0=py_1 < - xarray=0.14.1=py_1 > - xarray=0.15.0=py_0 < - dask==2.9.2 > - dask==2.12.0 > - salem==0.2.4 < - xclim==0.13.0 > - xclim==0.14.0 ``` Full conda env export Diff: [200120-200309-conda-env-export.diff.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/4309639/200120-200309-conda-env-export.diff.txt) ```diff 10c10 < - alembic=1.3.2=py_0 --- > - alembic=1.4.1=py_0 14,16c14,16 < - beautifulsoup4=4.8.2=py36_0 < - birdy=v0.6.5=py_0 < - bleach=3.1.0=py_0 --- > - beautifulsoup4=4.8.2=py37_0 > - birdy=v0.6.6=py_0 > - bleach=3.1.1=py_0 18d17 < - bokeh=1.4.0=py36_0 20c19 < - boost-cpp=1.70.0=h8e57a91_2 --- > - boost-cpp=1.72.0=h8e57a91_0 25,27c24,26 < - cartopy=0.17.0=py36h423102d_1009 < - cdat_info=8.2=py_6 < - cdtime=3.1.2=py36h1ac8016_8 --- > - cartopy=0.17.0=py37h39d8c00_1011 > - cdat_info=8.2=py_7 > - cdtime=3.1.3=py37h1ac8016_0 29c28 < - certifi=2019.11.28=py36_0 --- > - certifi=2019.11.28=py37_0 31c30 < - cffi=1.13.2=py36h8022711_0 --- > - cffi=1.14.0=py37hd463f26_0 33,34c32,33 < - cftime=1.0.4.2=py36hc1659b7_0 < - chardet=3.0.4=py36_1003 --- > - cftime=1.0.4.2=py37hc1659b7_0 > - chardet=3.0.4=py37_1003 40,42c39,41 < - coverage=5.0.3=py36h516909a_0 < - cryptography=2.8=py36h72c5cf5_1 < - curl=7.65.3=hf8cf82a_0 --- > - coverage=5.0.3=py37h516909a_0 > - cryptography=2.8=py37h72c5cf5_1 > - curl=7.68.0=hf8cf82a_0 45c44 < - decorator=4.4.1=py_0 --- > - decorator=4.4.2=py_0 51,55c50,54 < - entrypoints=0.3=py36_1000 < - esgf-compute-api=2.2.1=py_2 < - esmf=8.0.0=nompi_he6d0a24_4 < - esmpy=8.0.0=nompi_py36hf0e99fa_1 < - expat=2.2.5=he1b5a44_1004 --- > - entrypoints=0.3=py37_1000 > - esgf-compute-api=2.2.3=py_0 > - esmf=8.0.0=nompi_he6d0a24_5 > - esmpy=8.0.0=nompi_py37hf0e99fa_1 > - expat=2.2.9=he1b5a44_2 57c56 < - fiona=1.8.13=py36h900e953_0 --- > - fiona=1.8.13=py37h900e953_0 62c61 < - future=0.18.2=py36_0 --- > - future=0.18.2=py37_0 64,66c63,65 < - gdal=3.0.2=py36hbb6b9fb_7 < - genutil=8.2=py36hc1659b7_3 < - geopandas=0.6.2=py_0 --- > - gdal=3.0.4=py37hbb6b9fb_1 > - genutil=8.2=py37hc1659b7_3 > - geopandas=0.7.0=py_1 68c67 < - geotiff=1.5.1=hbd99317_7 --- > - geotiff=1.5.1=hcbe54f9_9 71,75c70,74 < - giflib=5.2.1=h516909a_1 < - gitdb2=2.0.6=py_0 < - gitpython=3.0.5=py_0 < - glib=2.58.3=py36h6f030ca_1002 < - gmp=6.2.0=he1b5a44_0 --- > - giflib=5.2.1=h516909a_2 > - gitdb=4.0.2=py_0 > - gitpython=3.1.0=py_0 > - glib=2.58.3=py37h6f030ca_1002 > - gmp=6.2.0=he1b5a44_2 77,78c76,77 < - gst-plugins-base=1.14.5=h0935bb2_0 < - gstreamer=1.14.5=h36ae1b5_0 --- > - gst-plugins-base=1.14.5=h0935bb2_2 > - gstreamer=1.14.5=h36ae1b5_2 82,86c81,85 < - idna=2.8=py36_1000 < - importlib_metadata=1.4.0=py36_0 < - ipykernel=5.1.3=py36h5ca1d4c_0 < - ipyleaflet=0.12.1=py36_0 < - ipython=7.11.1=py36h5ca1d4c_0 --- > - idna=2.9=py_1 > - importlib_metadata=1.5.0=py37_0 > - ipykernel=5.1.4=py37h5ca1d4c_0 > - ipyleaflet=0.12.3=py_1 > - ipython=7.13.0=py37h5ca1d4c_0 90,91c89,90 < - jedi=0.15.2=py36_0 < - jinja2=2.10.3=py_0 --- > - jedi=0.16.0=py37_0 > - jinja2=2.11.1=py_0 94,95c93,94 < - json5=0.8.5=py_0 < - jsonschema=3.2.0=py36_0 --- > - json5=0.9.0=py_0 > - jsonschema=3.2.0=py37_0 97,102c96,103 < - jupyter_client=5.3.4=py36_1 < - jupyter_console=5.1.0=py36_0 < - jupyter_core=4.6.1=py36_0 < - jupyter_server=0.1.1=py36_0 < - jupyterhub=1.0.0=py36_0 < - jupyterlab=1.2.5=py_0 --- > - jupyter_client=6.0.0=py_0 > - jupyter_console=6.0.0=py_0 > - jupyter_core=4.6.3=py37_0 > - jupyter_server=0.1.1=py37_0 > - jupyter_telemetry=0.0.5=py_0 > - jupyterhub=1.1.0=py37_2 > - jupyterhub-base=1.1.0=py37_2 > - jupyterlab=2.0.1=py_0 104c105 < - jupyterlab_server=1.0.6=py_0 --- > - jupyterlab_server=1.0.7=py_0 106c107 < - kiwisolver=1.1.0=py36hc9558a2_0 --- > - kiwisolver=1.1.0=py37hc9558a2_0 109c110,111 < - lazy-object-proxy=1.4.3=py36h516909a_0 --- > - lazy-object-proxy=1.4.3=py37h516909a_1 > - ld_impl_linux-64=2.33.1=h53a641e_8 113c115 < - libcf=1.0.3=py36hdee1361_5 --- > - libcf=1.0.3=py37hdee1361_5 115c117 < - libcurl=7.65.3=hda55be3_0 --- > - libcurl=7.68.0=hda55be3_0 122,123c124,125 < - libgdal=3.0.2=hbe56659_7 < - libgfortran-ng=7.3.0=hdf63c60_4 --- > - libgdal=3.0.4=h022d3c0_1 > - libgfortran-ng=7.3.0=hdf63c60_5 127c129 < - libkml=1.3.0=h4fcabce_1010 --- > - libkml=1.3.0=hb574062_1011 130c132 < - libnetcdf=4.7.3=nompi_h94020b1_100 --- > - libnetcdf=4.7.3=nompi_h9f9fd6a_101 133c135 < - libpq=12.1=hd9ab2ff_0 --- > - libpq=12.2=hae5116b_0 135,136c137,138 < - libspatialindex=1.9.3=he1b5a44_1 < - libspatialite=4.3.0a=h343d7df_1033 --- > - libspatialindex=1.9.3=he1b5a44_3 > - libspatialite=4.3.0a=hd318ce7_1035 145c147 < - libxkbcommon=0.9.1=hebb1f50_0 --- > - libxkbcommon=0.10.0=he1b5a44_0 148c150 < - lxml=4.4.2=py36h7ec2d77_0 --- > - lxml=4.5.0=py37h7ec2d77_0 151,153c153,155 < - markupsafe=1.1.1=py36h516909a_0 < - matplotlib=3.1.2=py36_1 < - matplotlib-base=3.1.2=py36h250f245_1 --- > - markupsafe=1.1.1=py37h516909a_0 > - matplotlib=3.2.0=1 > - matplotlib-base=3.2.0=py37h250f245_1 156,157c158,159 < - mistune=0.8.4=py36h516909a_1000 < - more-itertools=8.1.0=py_0 --- > - mistune=0.8.4=py37h516909a_1000 > - more-itertools=8.2.0=py_0 159,162c161,164 < - nbconvert=5.6.1=py36_0 < - nbdime=1.1.0=py36_0 < - nbformat=5.0.3=py_0 < - nbval=0.9.4=py_0 --- > - nbconvert=5.6.1=py37_0 > - nbdime=1.1.0=py37_0 > - nbformat=5.0.4=py_0 > - nbval=0.9.5=py_0 165c167 < - netcdf4=1.5.3=nompi_py36hd35fb8e_102 --- > - netcdf4=1.5.3=nompi_py37hd35fb8e_102 167,169c169,171 < - nodejs=13.6.0=h10a4023_0 < - notebook=6.0.2=py36_0 < - nspr=4.24=he1b5a44_0 --- > - nodejs=13.9.0=h10a4023_0 > - notebook=6.0.3=py37_0 > - nspr=4.25=he1b5a44_0 171c173 < - numpy=1.17.5=py36h95a1406_0 --- > - numpy=1.18.1=py37h95a1406_0 178,179c180,181 < - owslib=0.19.0=py_2 < - packaging=20.0=py_0 --- > - owslib=0.19.1=py_0 > - packaging=20.1=py_0 181,182c183,184 < - pandas=0.25.3=py36hb3f55d8_0 < - pandoc=2.9.1.1=0 --- > - pandas=1.0.1=py37hb3f55d8_0 > - pandoc=2.9.2=0 184,189c186,191 < - parso=0.5.2=py_0 < - pcre=8.43=he1b5a44_0 < - pexpect=4.7.0=py36_0 < - pickleshare=0.7.5=py36_1000 < - pillow=7.0.0=py36hefe7db6_0 < - pip=19.3.1=py36_0 --- > - parso=0.6.2=py_0 > - pcre=8.44=he1b5a44_0 > - pexpect=4.8.0=py37_0 > - pickleshare=0.7.5=py37_1000 > - pillow=7.0.0=py37hefe7db6_0 > - pip=20.0.2=py_2 191c193 < - pluggy=0.12.0=py_0 --- > - pluggy=0.13.0=py37_0 194,195c196,197 < - postgresql=12.1=hc63931a_0 < - proj=6.2.1=hc80f0dc_0 --- > - postgresql=12.2=hf1211e9_0 > - proj=6.3.1=hc80f0dc_1 197c199 < - prompt_toolkit=3.0.2=py_0 --- > - prompt_toolkit=2.0.10=py_0 201,203c203,205 < - pycparser=2.19=py36_1 < - pycurl=7.43.0.4=py36h16ce93b_0 < - pydap=3.2.2=py36_1000 --- > - pycparser=2.20=py_0 > - pycurl=7.43.0.5=py37h16ce93b_0 > - pydap=3.2.2=py37_1000 205c207 < - pygments=2.5.2=py_0 --- > - pygments=2.6.1=py_0 207,208c209,210 < - pykdtree=1.3.1=py36hc1659b7_1002 < - pyopenssl=19.1.0=py36_0 --- > - pykdtree=1.3.1=py37hc1659b7_1002 > - pyopenssl=19.1.0=py_1 210,212c212,214 < - pyproj=2.4.2.post1=py36h12732c1_0 < - pyqt=5.12.3=py36hcca6a23_1 < - pyrsistent=0.15.7=py36h516909a_0 --- > - pyproj=2.5.0=py37he3cd046_1 > - pyqt=5.12.3=py37hcca6a23_1 > - pyrsistent=0.15.7=py37h516909a_0 214,216c216,218 < - pysocks=1.7.1=py36_0 < - pytest=5.3.4=py36_0 < - python=3.6.7=h357f687_1006 --- > - pysocks=1.7.1=py37_0 > - pytest=5.3.5=py37_1 > - python=3.7.6=h357f687_4_cpython 218a221,222 > - python-json-logger=0.1.11=py_0 > - python_abi=3.7=1_cp37m 220,221c224 < - pyyaml=5.3=py36h516909a_0 < - pyzmq=18.1.1=py36h1768529_0 --- > - pyzmq=19.0.0=py37h1768529_0 223,224c226,228 < - qtconsole=4.6.0=py_0 < - rasterio=1.1.2=py36h900e953_0 --- > - qtconsole=4.7.1=py_0 > - qtpy=1.9.0=py_0 > - rasterio=1.1.3=py37h900e953_0 226,228c230,235 < - requests=2.22.0=py36_1 < - rtree=0.9.3=py36h7b0cdae_0 < - scipy=1.4.1=py36h921218d_0 --- > - regionmask=0.5.0=py_1 > - requests=2.23.0=py37_0 > - rtree=0.9.4=py37h7b0cdae_0 > - ruamel.yaml=0.16.6=py37h516909a_0 > - ruamel.yaml.clib=0.2.0=py37h516909a_0 > - scipy=1.4.1=py37h921218d_0 230,233c237,240 < - setuptools=45.1.0=py36_0 < - shapely=1.6.4=py36h5d51c17_1007 < - six=1.14.0=py36_0 < - smmap2=2.0.5=py_0 --- > - setuptools=46.0.0=py37_0 > - shapely=1.7.0=py37h5d51c17_0 > - six=1.14.0=py37_0 > - smmap=3.0.1=py_0 235,236c242,243 < - soupsieve=1.9.4=py36_0 < - sqlalchemy=1.3.12=py36h516909a_0 --- > - soupsieve=1.9.4=py37_0 > - sqlalchemy=1.3.13=py37h516909a_0 239c246 < - terminado=0.8.3=py36_0 --- > - terminado=0.8.3=py37_0 244,245c251,252 < - tornado=6.0.3=py36h516909a_0 < - traitlets=4.3.3=py36_0 --- > - tornado=6.0.4=py37h516909a_0 > - traitlets=4.3.3=py37_0 249c256 < - urllib3=1.25.7=py36_0 --- > - urllib3=1.25.7=py37_0 251,252c258,259 < - voila=0.1.20=py_0 < - vtk-cdat=8.2.0.8.2=py36_mesalibhead77ed_0 --- > - voila=0.1.21=py_0 > - vtk-cdat=8.2.0.8.2=py37_mesalibhead77ed_0 255c262 < - webob=1.8.5=py_0 --- > - webob=1.8.6=py_0 257,259c264,266 < - wheel=0.33.6=py36_0 < - widgetsnbextension=3.5.1=py36_0 < - wrapt=1.11.2=py36h516909a_0 --- > - wheel=0.34.2=py_1 > - widgetsnbextension=3.5.1=py37_0 > - wrapt=1.12.1=py37h516909a_0 261c268 < - xarray=0.14.1=py_1 --- > - xarray=0.15.0=py_0 275d281 < - yaml=0.2.2=h516909a_1 277c283 < - zipp=2.0.0=py_0 --- > - zipp=3.1.0=py_0 282c288,289 < - bottleneck==1.3.1 --- > - bokeh==2.0.0 > - bottleneck==1.3.2 284c291 < - cloudpickle==1.2.2 --- > - cloudpickle==1.3.0 286,287c293,294 < - dask==2.9.2 < - distributed==2.9.3 --- > - dask==2.12.0 > - distributed==2.12.0 293c300 < - markdown==3.1.1 --- > - markdown==3.2.1 295c302 < - msgpack==0.6.2 --- > - msgpack==1.0.0 297c304 < - pint==0.9 --- > - pint==0.11 299c306 < - psutil==5.6.7 --- > - psutil==5.7.0 301a309 > - pyyaml==5.3 304c312,313 < - scikit-learn==0.22.1 --- > - salem==0.2.4 > - scikit-learn==0.22.2.post1 308,309c317,319 < - xclim==0.13.0 < - zict==1.0.0 --- > - typing-extensions==3.7.4.1 > - xclim==0.14.0 > - zict==2.0.0 ``` Full new conda env export: [200309-conda-env-export.yml.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/4309640/200309-conda-env-export.yml.txt) ``` name: birdy channels: - cdat - conda-forge - defaults dependencies: - _libgcc_mutex=0.1=conda_forge - _openmp_mutex=4.5=0_gnu - affine=2.3.0=py_0 - alembic=1.4.1=py_0 - async_generator=1.10=py_0 - attrs=19.3.0=py_0 - backcall=0.1.0=py_0 - beautifulsoup4=4.8.2=py37_0 - birdy=v0.6.6=py_0 - bleach=3.1.1=py_0 - blinker=1.4=py_1 - boltons=20.0.0=py_0 - boost-cpp=1.72.0=h8e57a91_0 - branca=0.3.1=py_0 - bzip2=1.0.8=h516909a_2 - ca-certificates=2019.11.28=hecc5488_0 - cairo=1.16.0=hfb77d84_1002 - cartopy=0.17.0=py37h39d8c00_1011 - cdat_info=8.2=py_7 - cdtime=3.1.3=py37h1ac8016_0 - cdutil=8.2=py_2 - certifi=2019.11.28=py37_0 - certipy=0.1.3=py_0 - cffi=1.14.0=py37hd463f26_0 - cfitsio=3.470=hb60a0a2_2 - cftime=1.0.4.2=py37hc1659b7_0 - chardet=3.0.4=py37_1003 - click=7.0=py_0 - click-plugins=1.1.1=py_0 - cligj=0.5.0=py_0 - colorama=0.4.3=py_0 - configurable-http-proxy=4.2.0=node13_he01fd0c_2 - coverage=5.0.3=py37h516909a_0 - cryptography=2.8=py37h72c5cf5_1 - curl=7.68.0=hf8cf82a_0 - cycler=0.10.0=py_2 - dbus=1.13.6=he372182_0 - decorator=4.4.2=py_0 - defusedxml=0.6.0=py_0 - descartes=1.1.0=py_4 - distarray=2.12.2=py_1 - docopt=0.6.2=py_1 - dv3d=8.2=py_0 - entrypoints=0.3=py37_1000 - esgf-compute-api=2.2.3=py_0 - esmf=8.0.0=nompi_he6d0a24_5 - esmpy=8.0.0=nompi_py37hf0e99fa_1 - expat=2.2.9=he1b5a44_2 - ffmpeg=4.2=h167e202_0 - fiona=1.8.13=py37h900e953_0 - fontconfig=2.13.1=h86ecdb6_1001 - freetype=2.10.0=he983fc9_1 - freexl=1.0.5=h14c3975_1002 - funcsigs=1.0.2=py_3 - future=0.18.2=py37_0 - g2clib=1.6.0=hf3f1b0b_9 - gdal=3.0.4=py37hbb6b9fb_1 - genutil=8.2=py37hc1659b7_3 - geopandas=0.7.0=py_1 - geos=3.8.0=he1b5a44_0 - geotiff=1.5.1=hcbe54f9_9 - gettext=0.19.8.1=hc5be6a0_1002 - ghostscript=9.22=hf484d3e_1001 - giflib=5.2.1=h516909a_2 - gitdb=4.0.2=py_0 - gitpython=3.1.0=py_0 - glib=2.58.3=py37h6f030ca_1002 - gmp=6.2.0=he1b5a44_2 - gnutls=3.6.5=hd3a4fd2_1002 - gst-plugins-base=1.14.5=h0935bb2_2 - gstreamer=1.14.5=h36ae1b5_2 - hdf4=4.2.13=hf30be14_1003 - hdf5=1.10.5=nompi_h3c11f04_1104 - icu=64.2=he1b5a44_1 - idna=2.9=py_1 - importlib_metadata=1.5.0=py37_0 - ipykernel=5.1.4=py37h5ca1d4c_0 - ipyleaflet=0.12.3=py_1 - ipython=7.13.0=py37h5ca1d4c_0 - ipython_genutils=0.2.0=py_1 - ipywidgets=7.5.1=py_0 - jasper=1.900.1=h07fcdf6_1006 - jedi=0.16.0=py37_0 - jinja2=2.11.1=py_0 - jpeg=9c=h14c3975_1001 - json-c=0.13.1=h14c3975_1001 - json5=0.9.0=py_0 - jsonschema=3.2.0=py37_0 - jupyter=1.0.0=py_2 - jupyter_client=6.0.0=py_0 - jupyter_console=6.0.0=py_0 - jupyter_core=4.6.3=py37_0 - jupyter_server=0.1.1=py37_0 - jupyter_telemetry=0.0.5=py_0 - jupyterhub=1.1.0=py37_2 - jupyterhub-base=1.1.0=py37_2 - jupyterlab=2.0.1=py_0 - jupyterlab_pygments=0.1.0=py_0 - jupyterlab_server=1.0.7=py_0 - kealib=1.4.10=h58c409b_1005 - kiwisolver=1.1.0=py37hc9558a2_0 - krb5=1.16.4=h2fd8d38_0 - lame=3.100=h14c3975_1001 - lazy-object-proxy=1.4.3=py37h516909a_1 - ld_impl_linux-64=2.33.1=h53a641e_8 - libblas=3.8.0=11_openblas - libcblas=3.8.0=11_openblas - libcdms=3.1.2=ha54dda3_8 - libcf=1.0.3=py37hdee1361_5 - libclang=9.0.1=default_hde54327_0 - libcurl=7.68.0=hda55be3_0 - libdap4=3.20.4=hd3bb157_0 - libdrs=3.1.2=h9b7ed86_9 - libdrs_f=3.1.2=h322d3c2_5 - libedit=3.1.20170329=hf8c457e_1001 - libffi=3.2.1=he1b5a44_1006 - libgcc-ng=9.2.0=h24d8f2e_2 - libgdal=3.0.4=h022d3c0_1 - libgfortran-ng=7.3.0=hdf63c60_5 - libgomp=9.2.0=h24d8f2e_2 - libiconv=1.15=h516909a_1005 - libidn2=2.3.0=h516909a_0 - libkml=1.3.0=hb574062_1011 - liblapack=3.8.0=11_openblas - libllvm9=9.0.1=hc9558a2_0 - libnetcdf=4.7.3=nompi_h9f9fd6a_101 - libopenblas=0.3.6=h6e990d7_6 - libpng=1.6.37=hed695b0_0 - libpq=12.2=hae5116b_0 - libsodium=1.0.17=h516909a_0 - libspatialindex=1.9.3=he1b5a44_3 - libspatialite=4.3.0a=hd318ce7_1035 - libssh2=1.8.2=h22169c7_2 - libstdcxx-ng=9.2.0=hdf63c60_2 - libtiff=4.1.0=hc3755c2_3 - libunistring=0.9.10=h14c3975_0 - libuuid=2.32.1=h14c3975_1000 - libuv=1.34.0=h516909a_0 - libwebp=1.0.2=h56121f0_5 - libxcb=1.13=h14c3975_1002 - libxkbcommon=0.10.0=he1b5a44_0 - libxml2=2.9.10=hee79883_0 - libxslt=1.1.33=h31b3aaa_0 - lxml=4.5.0=py37h7ec2d77_0 - lz4-c=1.8.3=he1b5a44_1001 - mako=1.1.0=py_0 - markupsafe=1.1.1=py37h516909a_0 - matplotlib=3.2.0=1 - matplotlib-base=3.2.0=py37h250f245_1 - mechanicalsoup=0.12.0=py_0 - mesalib=18.3.1=h590aaf7_0 - mistune=0.8.4=py37h516909a_1000 - more-itertools=8.2.0=py_0 - munch=2.5.0=py_0 - nbconvert=5.6.1=py37_0 - nbdime=1.1.0=py37_0 - nbformat=5.0.4=py_0 - nbval=0.9.5=py_0 - ncurses=6.1=hf484d3e_1002 - netcdf-fortran=4.5.2=nompi_h09cde99_103 - netcdf4=1.5.3=nompi_py37hd35fb8e_102 - nettle=3.4.1=h1bed415_1002 - nodejs=13.9.0=h10a4023_0 - notebook=6.0.3=py37_0 - nspr=4.25=he1b5a44_0 - nss=3.47=he751ad9_0 - numpy=1.18.1=py37h95a1406_0 - oauthlib=3.0.1=py_0 - olefile=0.46=py_0 - openblas=0.3.6=h6e990d7_6 - openh264=1.8.0=hdbcaa40_1000 - openjpeg=2.3.1=h981e76c_3 - openssl=1.1.1d=h516909a_0 - owslib=0.19.1=py_0 - packaging=20.1=py_0 - pamela=1.0.0=py_0 - pandas=1.0.1=py37hb3f55d8_0 - pandoc=2.9.2=0 - pandocfilters=1.4.2=py_1 - parso=0.6.2=py_0 - pcre=8.44=he1b5a44_0 - pexpect=4.8.0=py37_0 - pickleshare=0.7.5=py37_1000 - pillow=7.0.0=py37hefe7db6_0 - pip=20.0.2=py_2 - pixman=0.38.0=h516909a_1003 - pluggy=0.13.0=py37_0 - poppler=0.67.0=h14e79db_8 - poppler-data=0.4.9=1 - postgresql=12.2=hf1211e9_0 - proj=6.3.1=hc80f0dc_1 - prometheus_client=0.7.1=py_0 - prompt_toolkit=2.0.10=py_0 - pthread-stubs=0.4=h14c3975_1001 - ptyprocess=0.6.0=py_1001 - py=1.8.1=py_0 - pycparser=2.20=py_0 - pycurl=7.43.0.5=py37h16ce93b_0 - pydap=3.2.2=py37_1000 - pyepsg=0.4.0=py_0 - pygments=2.6.1=py_0 - pyjwt=1.7.1=py_0 - pykdtree=1.3.1=py37hc1659b7_1002 - pyopenssl=19.1.0=py_1 - pyparsing=2.4.6=py_0 - pyproj=2.5.0=py37he3cd046_1 - pyqt=5.12.3=py37hcca6a23_1 - pyrsistent=0.15.7=py37h516909a_0 - pyshp=2.1.0=py_0 - pysocks=1.7.1=py37_0 - pytest=5.3.5=py37_1 - python=3.7.6=h357f687_4_cpython - python-dateutil=2.8.1=py_0 - python-editor=1.0.4=py_0 - python-json-logger=0.1.11=py_0 - python_abi=3.7=1_cp37m - pytz=2019.3=py_0 - pyzmq=19.0.0=py37h1768529_0 - qt=5.12.5=hd8c4c69_1 - qtconsole=4.7.1=py_0 - qtpy=1.9.0=py_0 - rasterio=1.1.3=py37h900e953_0 - readline=8.0=hf8c457e_0 - regionmask=0.5.0=py_1 - requests=2.23.0=py37_0 - rtree=0.9.4=py37h7b0cdae_0 - ruamel.yaml=0.16.6=py37h516909a_0 - ruamel.yaml.clib=0.2.0=py37h516909a_0 - scipy=1.4.1=py37h921218d_0 - send2trash=1.5.0=py_0 - setuptools=46.0.0=py37_0 - shapely=1.7.0=py37h5d51c17_0 - six=1.14.0=py37_0 - smmap=3.0.1=py_0 - snuggs=1.4.7=py_0 - soupsieve=1.9.4=py37_0 - sqlalchemy=1.3.13=py37h516909a_0 - sqlite=3.30.1=hcee41ef_0 - tbb=2018.0.5=h2d50403_0 - terminado=0.8.3=py37_0 - testpath=0.4.4=py_0 - threddsclient=0.4.2=py_0 - tiledb=1.7.0=hcde45ca_2 - tk=8.6.10=hed695b0_0 - tornado=6.0.4=py37h516909a_0 - traitlets=4.3.3=py37_0 - traittypes=0.2.1=py_1 - tzcode=2019a=h516909a_1002 - udunits2=2.2.27.6=h4e0c4b3_1001 - urllib3=1.25.7=py37_0 - vcs=8.2=py_2 - voila=0.1.21=py_0 - vtk-cdat=8.2.0.8.2=py37_mesalibhead77ed_0 - wcwidth=0.1.8=py_0 - webencodings=0.5.1=py_1 - webob=1.8.6=py_0 - wget=1.20.1=h22169c7_0 - wheel=0.34.2=py_1 - widgetsnbextension=3.5.1=py37_0 - wrapt=1.12.1=py37h516909a_0 - x264=1!152.20180806=h14c3975_0 - xarray=0.15.0=py_0 - xerces-c=3.2.2=h8412b87_1004 - xorg-kbproto=1.0.7=h14c3975_1002 - xorg-libice=1.0.10=h516909a_0 - xorg-libsm=1.2.3=h84519dc_1000 - xorg-libx11=1.6.9=h516909a_0 - xorg-libxau=1.0.9=h14c3975_0 - xorg-libxdmcp=1.1.3=h516909a_0 - xorg-libxext=1.3.4=h516909a_0 - xorg-libxrender=0.9.10=h516909a_1002 - xorg-renderproto=0.11.1=h14c3975_1002 - xorg-xextproto=7.3.0=h14c3975_1002 - xorg-xproto=7.0.31=h14c3975_1007 - xz=5.2.4=h14c3975_1001 - zeromq=4.3.2=he1b5a44_2 - zipp=3.1.0=py_0 - zlib=1.2.11=h516909a_1006 - zstd=1.4.4=h3b9ef0a_1 - pip: - astunparse==1.6.3 - bokeh==2.0.0 - bottleneck==1.3.2 - cdms2==3.1.4 - cloudpickle==1.3.0 - colour==0.1.5 - dask==2.12.0 - distributed==2.12.0 - fsspec==0.6.2 - geojson==2.5.0 - heapdict==1.0.1 - joblib==0.14.1 - locket==0.2.0 - markdown==3.2.1 - mpld3==0.3 - msgpack==1.0.0 - partd==1.1.0 - pint==0.11 - pixiedust==1.1.18 - psutil==5.7.0 - pyqt5-sip==4.19.18 - pyqtwebengine==5.12.1 - pyyaml==5.3 - regrid2==3.1.4 - requests-magpie==0.1.1 - salem==0.2.4 - scikit-learn==0.22.2.post1 - sortedcontainers==2.1.0 - tblib==1.6.0 - toolz==0.10.0 - typing-extensions==3.7.4.1 - xclim==0.14.0 - zict==2.0.0 prefix: /usr/local/envs/birdy ```
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Mar 10, 2020
… salem for Era5 Raven notebooks See PR Ouranosinc/PAVICS-e2e-workflow-tests#36 or commit Ouranosinc/PAVICS-e2e-workflow-tests@f916bea jupyter_bokeh (the extension, not the package) was removed due to this issue bokeh/jupyter_bokeh#93 Era5 Raven notebook PR: Ouranosinc/raven#200 Noticeable rather large Jupyter env changes: ```diff < - birdy=v0.6.5=py_0 > - birdy=v0.6.6=py_0 < - bokeh=1.4.0=py36_0 > - bokeh==2.0.0 # from pip recursive dependencies (we get newer version by not explicitly get from conda !) < - esgf-compute-api=2.2.1=py_2 > - esgf-compute-api=2.2.3=py_0 < - jupyterlab=1.2.5=py_0 > - jupyterlab=2.0.1=py_0 < - owslib=0.19.0=py_2 > - owslib=0.19.1=py_0 < - pandas=0.25.3=py36hb3f55d8_0 > - pandas=1.0.1=py37hb3f55d8_0 < - python=3.6.7=h357f687_1006 > - python=3.7.6=h357f687_4_cpython > - regionmask=0.5.0=py_1 < - xarray=0.14.1=py_1 > - xarray=0.15.0=py_0 < - dask==2.9.2 > - dask==2.12.0 > - salem==0.2.4 < - xclim==0.13.0 > - xclim==0.14.0 ``` Full conda env export Diff: [200120-200309-conda-env-export.diff.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/4309639/200120-200309-conda-env-export.diff.txt) Full new conda env export: [200309-conda-env-export.yml.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/4309640/200309-conda-env-export.yml.txt)
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Both Bokeh and JupyterLab are from conda, today.
Conda
environment.ymlfile to reproduce: https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/blob/ddc9c67e6b02f2e71f0328d71a8a4039257d20ea/docker/environment.ymlSteps to reproduce:
Build error from the docker build command above:
Content of
/tmp/jupyterlab-debug-t1jvjykq.log:The text was updated successfully, but these errors were encountered: