2023.5.0.dev0

What's Changed

• FIX: remove original sequences after gzipping by @misialq in #152
• ENH: Add scraper sync note by @adamovanja in #153

Full Changelog: 2023.2.0.dev0...2023.5.0.dev0

2023.2.0.dev0

What's Changed

• FIX: Sequences mismatch by @adamovanja in #149
• Update QIIME 2 versions in README by @lina-kim in #150

Full Changelog: 2022.11.0...2023.2.0.dev0

2022.11.0

What's Changed

• MAINT: add DOI badges by @misialq in #112
• ENH: Fetch metadata & sequences by StudyID by @adamovanja in #114
• ENH: Scraping DOI from library by @adamovanja in #113
• ENH: Add scraping of other IDs by @adamovanja in #116
• MAINT: CI improvements by @misialq in #120
• FIX: Hiding Zotero user info by @adamovanja in #121
• ENH: Full support sample and experiment IDs by @adamovanja in #122
• FIX: correctly install sra-toolkit during conda build by @misialq in #126
• ENH: Scrape hyphenated ID sequences by @adamovanja in #124
• ENH: Improved metadata fetching and error logging by @adamovanja in #125
• FIX: add SRA Toolkit configuration step by @misialq in #131
• FIX: Correctly scraping accessions with whitespace characters by @adamovanja in #133
• FIX: correct E-Direct param setting when fetching metadata by @misialq in #135
• MAINT: simplify coverage testing in the CI by @misialq in #138
• ENH: Option to preserve DOI names when refetching with failed_runs by @adamovanja in #129
• ENH: add an action to search for run IDs using a text query by @misialq in #136
• MAINT: update installation instructions to use conda by @misialq in #140
• ENH: improve data copy/gzip process after fetching fastq sequences by @misialq in #139
• ENH: Highlight downstream analysis outside of Q2 by @adamovanja in #141
• unzip tutorial by @nbokulich in #142
• MAINT: update citations by @misialq in #144
• MAINT: update DOI badge by @misialq in #145
• ENH: add more installation instructions by @adamovanja in #146
• FIX: metadata should only retain the runs that were requested by @misialq in #147

Full Changelog: 2022.2.0...2022.11.0

2022.11.0.dev0

MAINT: update installation instructions to use conda (#140)

* MAINT: update installation instructions to use conda
* Add missing channels
* update the tutorial

2022.4.0.dev0

What's Changed

• MAINT: add DOI badges by @misialq in #112
• ENH: Fetch metadata & sequences by StudyID by @adamovanja in #114
• ENH: Scraping DOI from library by @adamovanja in #113
• ENH: Add scraping of other IDs by @adamovanja in #116

Full Changelog: 2022.2.0...2022.4.0.dev0

2022.2: First release

This is the first public release of q2-fondue, accompanying the publication of Reproducible acquisition, management, and meta-analysis of nucleotide sequence (meta)data using q2-fondue.