chypoxia

Scripts to make data for comparative transcritomes from public database.

• Microarray
  • RMA.r R script to run RMA normalization at a time.
  • HN2cnt_marray.pl Hypoxia-normoxia pair ratio data to classify up, down and unchanged. microarray version.
• RNA-seq
  • run_trim_galore_s.sh Shell script to run trim_galore for single-end reads.
  • run_trim_galore_p.sh Shell script to run trim_galore for paired-end reads.
  • HN2cnt_RNAseq.pl Hypoxia-normoxia pair ratio data to classify up, down and unchanged. RNAseq version.
• Shared
  • PCA.r R script to execute primary component analysis (PCA).