[TESTS] Added tests for fixed position mode

scripts/run_tests.sh

@@ -7,6 +7,9 @@ if [ "$TRAVIS_BRANCH" = "unstable" ]; then
 	YELLOW='\033[1;33m'
 	NC='\033[0m' # No Color
 
+	CHECK_MARK='\u2714'
+	CROSS='\u2716'
+
 	TEST_DIR='test'
 
 	DATASETS=''
@@ -27,24 +30,39 @@ if [ "$TRAVIS_BRANCH" = "unstable" ]; then
 
 	for DATASET in $DATASETS
 	do
-		echo -e "Testing ChIP-Seq mode on $DATASET with -l 6 -d 6..."
+		echo -e "Now testing with $DATASET dataset :"
+		echo -e "\t Testing ChIP-Seq mode with parameters -l 6, -d 6..."
 		bin/dinamo -pf $TEST_DIR/$DATASET/$SIG_FILE -nf $TEST_DIR/$DATASET/$CTRL_FILE -l 6 -d 6 -o temp.meme --no-log > /dev/null
-		diff temp.meme $TEST_DIR/$DATASET/dinamo_6_6.meme
+		diff temp.meme $TEST_DIR/$DATASET/chipseq_6_6.meme
 		if [ $? -ne 0 ]; then
-        	echo -e "${RED}\u2716${NC}  Test failed; the program did not output the expected file." >&2
+        	echo -e "${RED}${CROSS}${NC}\t Test failed; the program did not output the expected file." >&2
 			exit 1
-		else
-			echo -e "${GREEN}\u2714${NC}  Test passed, no difference found."
     	fi
-			echo -e "Testing ChIP-Seq mode on $DATASET with -l 7 -d 3..."
+
+		echo -e "\t Testing ChIP-Seq mode with parameters -l 7, -d 3..."
 		bin/dinamo -pf $TEST_DIR/$DATASET/$SIG_FILE -nf $TEST_DIR/$DATASET/$CTRL_FILE -l 7 -d 3 -o temp.meme --no-log > /dev/null
-		diff temp.meme $TEST_DIR/$DATASET/dinamo_7_3.meme
+		diff temp.meme $TEST_DIR/$DATASET/chipseq_7_3.meme
+		if [ $? -ne 0 ]; then
+        	echo -e "${RED}${CROSS}${NC}\t Test failed; the program did not output the expected file." >&2
+			exit 1
+    	fi
+
+		echo -e "\t Testing fixed position mode with parameters -l 5, -d 5, -p 1..."
+		bin/dinamo -pf $TEST_DIR/$DATASET/$SIG_FILE -nf $TEST_DIR/$DATASET/$CTRL_FILE -l 5 -d 5 -p 1 --no-log > temp.res
+		diff temp.res $TEST_DIR/$DATASET/position_5_5_1.results
+		if [ $? -ne 0 ]; then
+        	echo -e "${RED}${CROSS}${NC}\t Test failed; the program did not output the expected file." >&2
+			exit 1
+    	fi
+
+		echo -e "\t Testing fixed position mode with parameters -l 7, -d 7, -p 4..."
+		bin/dinamo -pf $TEST_DIR/$DATASET/$SIG_FILE -nf $TEST_DIR/$DATASET/$CTRL_FILE -l 7 -d 7 -p 4 --no-log > temp.res
+		diff temp.res $TEST_DIR/$DATASET/position_7_7_4.results
 		if [ $? -ne 0 ]; then
-        	echo -e "${RED}\u2716${NC}  Test failed; the program did not output the expected file." >&2
+        	echo -e "${RED}${CROSS}${NC}\t Test failed; the program did not output the expected file." >&2
 			exit 1
-		else
-			echo -e "${GREEN}\u2714${NC}  Test passed, no difference found."
     	fi
+		echo -e "${GREEN}$DATASET tests were successful !${NC}\n"
 	done
 	rm temp.meme
 fi

test/GATA1/position_5_5_1.results

@@ -0,0 +1,11 @@
+TRTMT	0.000784359	9.02951e-09
+TTATC	0.000740922	2.77145e-08
+SABDT	0.000706795	4.7412e-08
+MTWMS	0.000604805	3.80063e-07
+AWMKS	0.000497683	3.58583e-06
+GAWAM	0.000489729	3.95898e-06
+CGWWC	0.000429908	1.78215e-05
+YSHGK	0.000394575	3.2372e-05
+TAARR	0.000390321	3.17489e-05
+DGATA	0.000375483	4.35234e-05
+RBTTC	0.000334822	0.000105883

test/GATA1/position_7_7_4.results

@@ -0,0 +1,21 @@
+TATCTYN	0.00104601	2.28838e-10
+WGATAAD	0.000859056	2.75432e-09
+GATAARV	0.000771244	1.8068e-08
+HRGATAA	0.000766921	5.90338e-08
+GTTWKCW	0.000732043	1.18162e-07
+KGTGTGY	0.00064512	2.28604e-07
+DVWGATA	0.000615284	2.96069e-07
+AWCTBHT	0.000591023	5.25569e-07
+RSAGASM	0.000586447	5.3972e-07
+DGSAGAD	0.000566435	8.00798e-07
+BTGTGAW	0.000557677	3.79441e-06
+TTTDYCY	0.000553209	1.19769e-06
+CMGCCMY	0.000537669	1.71144e-06
+WCYSCAG	0.000526032	2.30018e-06
+TTATCHD	0.000526032	2.30018e-06
+BBTTATC	0.000509984	2.72457e-06
+SWGTGTG	0.000490504	5.20283e-06
+CMYKCCC	0.000490504	5.20283e-06
+NTNCTGC	0.00047457	5.44486e-06
+TVTMWGG	0.000453519	9.55703e-06
+AKRHAGA	0.000438369	1.17474e-05

test/KLF1/position_5_5_1.results

@@ -0,0 +1,3 @@
+DGVCT	0.00764463	3.62914e-06
+CTKRG	0.0058509	0.000117103
+ATYTN	0.00530804	8.11278e-05

test/OCT4/position_5_5_1.results

@@ -0,0 +1,3 @@
+NAVAS	0.00144518	4.22802e-05
+RGBKK	0.00136627	6.52865e-05
+WBAMM	0.00131651	8.49527e-05

test/SOX2/position_5_5_1.results

@@ -0,0 +1,4 @@
+TKMMT	0.00225815	3.96009e-08
+KCTSW	0.00127471	2.47546e-05
+HCYRG	0.00108893	8.63835e-05
+GTGDC	0.00108221	9.38448e-05

test/SOX2/position_7_7_4.results

@@ -0,0 +1,2 @@
+TDGYTTT	0.00165908	7.51544e-06
+ASAATRR	0.00154835	1.50575e-05

test/STAT3/position_5_5_1.results

@@ -0,0 +1,8 @@
+GGMVG	0.00275042	4.21755e-06
+WMATG	0.00244788	1.94292e-05
+TGGCB	0.00244788	1.94292e-05
+YATTM	0.00236065	5.99516e-05
+CWKCB	0.00223765	2.74031e-05
+CGCSC	0.00216362	0.000120211
+TTYCN	0.00206351	5.22957e-05
+MHACA	0.00192369	9.07739e-05