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typo in delimiter for read_csv #10

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mmp3 opened this issue May 24, 2021 · 1 comment
Open

typo in delimiter for read_csv #10

mmp3 opened this issue May 24, 2021 · 1 comment

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@mmp3
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mmp3 commented May 24, 2021

compute_contribution_to_DA.py::355 reads:

pd.read_csv(function_mapping_file, dtype={0: str}, sep="]t")

which causes the file to be read incorrectly and therefore FishTaco fails to aggregate KOs to pathways or modules.

The sep argument should be \t.

@engal
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engal commented May 24, 2021

Thank you for letting us know, I've fixed the issue in this repository and am propagating it to the PIP version.

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