Scripts and datasets used for the paper "Multi-omics and machine learning reveal context-specific gene regulatory activities of PML::RARA in Acute Promyelocytic Leukemia" by Villiers et al.
R version 4.0.2 (2020-06-22)
mlr_2.18.0
ParamHelpers_1.14
parallelMap_1.5.0
here_1.0.1
SHAPforxgboost_0.1.0
Ckmeans.1d.dp_4.3.3
caret_6.0-86
ggplot2_3.3.6
lattice_0.20-41
archdata_1.2-1
xgboost_1.3.2.1
doParallel_1.0.16
iterators_1.0.13
foreach_1.5.1
stringr_1.4.0
data.table_1.13.6
org.Hs.eg.db_3.11.4
ChIPpeakAnno_3.22.4
Biostrings_2.56.0
XVector_0.28.0
Organism.dplyr_1.16.0
AnnotationFilter_1.12.0
dplyr_1.0.9
TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
GenomicFeatures_1.40.1
AnnotationDbi_1.50.3
edgeR_3.30.3
limma_3.44.3
GenomicInteractions_1.22.0
InteractionSet_1.16.0
SummarizedExperiment_1.18.2
DelayedArray_0.14.1
matrixStats_0.62.0
Biobase_2.48.0
GenomicRanges_1.40.0
GenomeInfoDb_1.24.2
IRanges_2.22.2
S4Vectors_0.26.1
BiocGenerics_0.34.0