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removing gdata dependency
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borishejblum committed Apr 17, 2023
1 parent 41ebfd2 commit c1a59cb
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8 changes: 4 additions & 4 deletions DESCRIPTION
@@ -1,8 +1,8 @@
Package: kernscr
Type: Package
Title: Kernel Machine Score Test for Semi-Competing Risks
Version: 1.0.5
Date: 2019-08-20
Version: 1.0.6
Date: 2023-04-17
Authors@R: c(person("Matey", "Neykov", role = c("aut"),
email = "mneykov@gmail.com"),
person(c("Boris", "P"), "Hejblum", role = c("aut", "cre"),
Expand All @@ -22,10 +22,10 @@ Imports:
mvtnorm,
stats
Suggests:
gdata,
readxl,
org.Hs.eg.db
License: GPL-2 | file LICENSE
LazyData: TRUE
BugReports: https://github.com/borishejblum/kernscr/issues
Encoding: UTF-8
RoxygenNote: 6.1.1
RoxygenNote: 7.2.3
3 changes: 3 additions & 0 deletions NEWS
@@ -1,6 +1,9 @@
News about the R package kernscr:
--------------------------------

Main changes in Version 1.0.6 (2023-04-17) - this is only a minor release:
* `gdata`suggestion replaced by `readxl`

Main changes in Version 1.0.4 (2019-08-20) - this is only a minor release:
* Documentation and CITATION updated
* CI added
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4 changes: 2 additions & 2 deletions R/kernscr-package.R
Expand Up @@ -6,8 +6,8 @@
#'\tabular{ll}{
#'Package: \tab kernscr\cr
#'Type: \tab Package\cr
#'Version: \tab 1.0.5\cr
#'Date: \tab 2019-08-20\cr
#'Version: \tab 1.0.6\cr
#'Date: \tab 2023-04-17\cr
#'License:\tab \href{http://www.gnu.org/licenses/gpl-2.0.txt}{GPL-2}\cr
#'}
#'The main function of the kernscr package is \code{\link{compute_all_tests}}
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4 changes: 2 additions & 2 deletions R/vijver.R
Expand Up @@ -28,13 +28,13 @@
#' download.file(paste0(urlPath, zipFile), zipFile)
#' unzip(zipFile, exdir="./temp_unzip")
#' xlsFile <- paste0("./temp_unzip/", filename, ".xls")
#' res <- gdata::read.xls(xlsFile, skip=skip)
#' res <- readxl::read_xls(xlsFile, skip=skip)
#' unlink(zipFile)
#' unlink("./temp_unzip", recursive=TRUE)
#' return(res)
#'}
#'
#'BC_dat_clin <- import_xls_from_zip(urlPath="http://ccb.nki.nl/data/",
#'BC_dat_clin <- import_xls_from_zip2(urlPath="http://ccb.nki.nl/data/",
#' filename="Table1_ClinicalData_Table",
#' zipname="nejm_table1",
#' skip=2
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8 changes: 5 additions & 3 deletions man/cancer_pathways.Rd

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15 changes: 12 additions & 3 deletions man/compute_all_tests.Rd

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12 changes: 9 additions & 3 deletions man/findRhoInterval.Rd

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4 changes: 2 additions & 2 deletions man/kernscr-package.Rd

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24 changes: 18 additions & 6 deletions man/plot_kernscr.Rd

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13 changes: 11 additions & 2 deletions man/sim_SCR_data.Rd

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