bgviewer

This project is now archived. To view brainglobe atlases, please see bg-brainrender-gui.

Visualisation and exploration of brain atlases from brainglobe.

3D viewer

Lightweight pyqt5 application that combines a brainrender scene and an interactive widget to explore an atlas' brain regions hierarchy.

Dark theme	Light theme

Usage

From the command line:

    bgviewer3d -f False -t dark

-f for fullscreen view and -t for light/dark theme.

The viewer can be used with any atlas supported by brainglobe's brainatlas_api, simply pass the atlas name to bgviewer3d:

    bgviewer3d -a allen_human_500um_v0.1

or

    bgviewer3d -a allen_mouse_25um_v0.2

You can also access the viewer's functionality programmatically:

from bgviewer import viewer3d


viewer3d.launch(atlas='allen_mouse_25um_v0.2', fullscreen=False, theme='light)