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implement manager view and dialog #124

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merged 6 commits into from
Jan 5, 2024
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@alessandrofelder alessandrofelder commented Dec 21, 2023

Description

What is this PR

  • Bug fix
  • Addition of a new feature
  • Other

Why is this PR needed?
We'd like to have a separate table view that allows updating and downloading of atlases via the BrainGlobe atlas API

What does this PR do?

This PR

  • implements this table view
  • does not add it to a widget - will follow in separate PR
    • for now, manual visual inspection of the class can be done by executing the python script below
from brainrender_napari.widgets.atlas_manager_view import AtlasManagerView
from qtpy.QtWidgets import QApplication

app = QApplication([])
view = AtlasManagerView()
view.show()
app.exec()

Some refactoring was needed so

  • different views can have different tooltips
  • different views can display a formatted atlas name in their tooltips without code duplication

References

Another step towards closing #21

How has this PR been tested?

New tests added to cover

Is this a breaking change?

Yes, AtlasTableModel constructor now takes an argument view_type, which specifies the class whose get_tooltip_text function it should call.

Does this PR require an update to the documentation?

If any features have changed, or have been added. Please explain how the documentation has been updated (and link to the associated PR). See here for details.

Checklist:

  • The code has been tested locally
  • Tests have been added to cover all new functionality (unit & integration)
  • The documentation has been updated to reflect any changes
  • The code has been formatted with pre-commit

and delegate tooltips to views
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codecov bot commented Dec 21, 2023

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (ebf43dc) 97.72% compared to head (f550c72) 98.06%.
Report is 1 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #124      +/-   ##
==========================================
+ Coverage   97.72%   98.06%   +0.34%     
==========================================
  Files           9       11       +2     
  Lines         396      466      +70     
==========================================
+ Hits          387      457      +70     
  Misses          9        9              

☔ View full report in Codecov by Sentry.
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@alessandrofelder alessandrofelder marked this pull request as ready for review December 21, 2023 16:27
so it's picked up by coverage
@alessandrofelder alessandrofelder self-assigned this Dec 22, 2023
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@IgorTatarnikov IgorTatarnikov left a comment

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Looks good 👍! I have a few small comments but nothing that needs to be urgently addressed.

The tooltips feel a bit sluggish, especially when moving the mouse within the same row. Is there any way to add a small delay before the tooltip is rendered?

brainrender_napari/widgets/atlas_manager_view.py Outdated Show resolved Hide resolved
Co-authored-by: Igor Tatarnikov <61896994+IgorTatarnikov@users.noreply.github.com>
@alessandrofelder alessandrofelder merged commit 014f5c5 into main Jan 5, 2024
12 checks passed
@alessandrofelder alessandrofelder deleted the atlas-manager-view branch January 5, 2024 11:40
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2 participants