napari-brainreg-standard

This plugin is now archived, all the functionality is available within napari-brainreg.

Visualise brainreg registration output in napari in standard space.

This is the companion plugin to napari-brainreg which loads the data in sample space.

Based on the napari cookiecutter plugin template and napari-ndtiffs by @tlambert03

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Installation

Assuming you already have napari installed, you can install napari-brainreg-standard via pip:

pip install napari-brainreg-standard

Usage

Open napari and drag your brainreg output directory (the one with the log file) onto the napari window.

Various images should then open, including:

• Image (downsampled) - the image used for registration
• atlas_name - overlay of the atlas annoations If you downsampled additional channels, these will also be loaded.