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Connectivity: Deprecation of older AEC processes, replaced with HENV
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,2 +1,2 @@ | ||
| % Brainstorm | ||
| % v. 3.220608 (08-Jun-2022) | ||
| % v. 3.220609 (09-Jun-2022) |
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176 changes: 88 additions & 88 deletions
176
toolbox/process/functions/process_aec2.m → toolbox/process/deprecated/process_aec2.m
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,88 +1,88 @@ | ||
| function varargout = process_aec2( varargin ) | ||
| % PROCESS_AEC2: Compute amplitude envelope correlation between one signal in one file, and all the signals in another file. | ||
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| % @============================================================================= | ||
| % This function is part of the Brainstorm software: | ||
| % https://neuroimage.usc.edu/brainstorm | ||
| % | ||
| % Copyright (c) University of Southern California & McGill University | ||
| % This software is distributed under the terms of the GNU General Public License | ||
| % as published by the Free Software Foundation. Further details on the GPLv3 | ||
| % license can be found at http://www.gnu.org/copyleft/gpl.html. | ||
| % | ||
| % FOR RESEARCH PURPOSES ONLY. THE SOFTWARE IS PROVIDED "AS IS," AND THE | ||
| % UNIVERSITY OF SOUTHERN CALIFORNIA AND ITS COLLABORATORS DO NOT MAKE ANY | ||
| % WARRANTY, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES OF | ||
| % MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE, NOR DO THEY ASSUME ANY | ||
| % LIABILITY OR RESPONSIBILITY FOR THE USE OF THIS SOFTWARE. | ||
| % | ||
| % For more information type "brainstorm license" at command prompt. | ||
| % =============================================================================@ | ||
| % | ||
| % Authors: Francois Tadel, 2012-2014 | ||
| % Peter Donhauser, 2017 | ||
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| eval(macro_method); | ||
| end | ||
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| %% ===== GET DESCRIPTION ===== | ||
| function sProcess = GetDescription() %#ok<DEFNU> | ||
| % Description the process | ||
| sProcess.Comment = 'Amplitude Envelope Correlation AxB'; | ||
| sProcess.Category = 'Custom'; | ||
| sProcess.SubGroup = 'Connectivity'; | ||
| sProcess.Index = 657; | ||
| sProcess.Description = 'https://neuroimage.usc.edu/brainstorm/Tutorials/Connectivity'; | ||
| % Definition of the input accepted by this process | ||
| sProcess.InputTypes = {'data', 'results', 'matrix'}; | ||
| sProcess.OutputTypes = {'timefreq', 'timefreq', 'timefreq'}; | ||
| sProcess.nInputs = 2; | ||
| sProcess.nMinFiles = 1; | ||
| sProcess.isPaired = 1; | ||
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| % === CONNECT INPUT | ||
| sProcess = process_corr2('DefineConnectOptions', sProcess); | ||
| % === FREQ BANDS | ||
| sProcess.options.freqbands.Comment = 'Frequency bands for the Hilbert transform:'; | ||
| sProcess.options.freqbands.Type = 'groupbands'; | ||
| sProcess.options.freqbands.Value = bst_get('DefaultFreqBands'); | ||
| % === Orthogonalize pairs of signals | ||
| sProcess.options.isorth.Comment = 'Orthogonalize signal pairs before envelope computation'; | ||
| sProcess.options.isorth.Type = 'checkbox'; | ||
| sProcess.options.isorth.Value = 0; | ||
| % === OUTPUT MODE | ||
| sProcess.options.outputmode.Comment = {'Save individual results (one file per input file)', 'Concatenate input files before processing (one file)', 'Save average connectivity matrix (one file)'}; | ||
| sProcess.options.outputmode.Type = 'radio'; | ||
| sProcess.options.outputmode.Value = 1; | ||
| sProcess.options.outputmode.Group = 'output'; | ||
| end | ||
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| %% ===== FORMAT COMMENT ===== | ||
| function Comment = FormatComment(sProcess) %#ok<DEFNU> | ||
| Comment = sProcess.Comment; | ||
| end | ||
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| %% ===== RUN ===== | ||
| function OutputFiles = Run(sProcess, sInputA, sInputB) %#ok<DEFNU> | ||
| % Input options | ||
| OPTIONS = process_corr2('GetConnectOptions', sProcess, sInputA, sInputB); | ||
| if isempty(OPTIONS) | ||
| OutputFiles = {}; | ||
| return | ||
| end | ||
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| OPTIONS.Method = 'aec'; | ||
| % Hilbert and frequency bands options | ||
| OPTIONS.Freqs = sProcess.options.freqbands.Value; | ||
| OPTIONS.isOrth = sProcess.options.isorth.Value; | ||
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| % Compute metric | ||
| OutputFiles = bst_connectivity({sInputA.FileName}, {sInputB.FileName}, OPTIONS); | ||
| end | ||
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| function varargout = process_aec2( varargin ) | ||
| % PROCESS_AEC2: Compute amplitude envelope correlation between one signal in one file, and all the signals in another file. | ||
|
|
||
| % @============================================================================= | ||
| % This function is part of the Brainstorm software: | ||
| % https://neuroimage.usc.edu/brainstorm | ||
| % | ||
| % Copyright (c) University of Southern California & McGill University | ||
| % This software is distributed under the terms of the GNU General Public License | ||
| % as published by the Free Software Foundation. Further details on the GPLv3 | ||
| % license can be found at http://www.gnu.org/copyleft/gpl.html. | ||
| % | ||
| % FOR RESEARCH PURPOSES ONLY. THE SOFTWARE IS PROVIDED "AS IS," AND THE | ||
| % UNIVERSITY OF SOUTHERN CALIFORNIA AND ITS COLLABORATORS DO NOT MAKE ANY | ||
| % WARRANTY, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES OF | ||
| % MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE, NOR DO THEY ASSUME ANY | ||
| % LIABILITY OR RESPONSIBILITY FOR THE USE OF THIS SOFTWARE. | ||
| % | ||
| % For more information type "brainstorm license" at command prompt. | ||
| % =============================================================================@ | ||
| % | ||
| % Authors: Francois Tadel, 2012-2014 | ||
| % Peter Donhauser, 2017 | ||
|
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| eval(macro_method); | ||
| end | ||
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| %% ===== GET DESCRIPTION ===== | ||
| function sProcess = GetDescription() %#ok<DEFNU> | ||
| % Description the process | ||
| sProcess.Comment = 'Amplitude Envelope Correlation AxB'; | ||
| sProcess.Category = 'Custom'; | ||
| sProcess.SubGroup = 'Connectivity'; | ||
| sProcess.Index = 657; | ||
| sProcess.Description = 'https://neuroimage.usc.edu/brainstorm/Tutorials/Connectivity'; | ||
| % Definition of the input accepted by this process | ||
| sProcess.InputTypes = {'data', 'results', 'matrix'}; | ||
| sProcess.OutputTypes = {'timefreq', 'timefreq', 'timefreq'}; | ||
| sProcess.nInputs = 2; | ||
| sProcess.nMinFiles = 1; | ||
| sProcess.isPaired = 1; | ||
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| % === CONNECT INPUT | ||
| sProcess = process_corr2('DefineConnectOptions', sProcess); | ||
| % === FREQ BANDS | ||
| sProcess.options.freqbands.Comment = 'Frequency bands for the Hilbert transform:'; | ||
| sProcess.options.freqbands.Type = 'groupbands'; | ||
| sProcess.options.freqbands.Value = bst_get('DefaultFreqBands'); | ||
| % === Orthogonalize pairs of signals | ||
| sProcess.options.isorth.Comment = 'Orthogonalize signal pairs before envelope computation'; | ||
| sProcess.options.isorth.Type = 'checkbox'; | ||
| sProcess.options.isorth.Value = 0; | ||
| % === OUTPUT MODE | ||
| sProcess.options.outputmode.Comment = {'Save individual results (one file per input file)', 'Concatenate input files before processing (one file)', 'Save average connectivity matrix (one file)'}; | ||
| sProcess.options.outputmode.Type = 'radio'; | ||
| sProcess.options.outputmode.Value = 1; | ||
| sProcess.options.outputmode.Group = 'output'; | ||
| end | ||
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| %% ===== FORMAT COMMENT ===== | ||
| function Comment = FormatComment(sProcess) %#ok<DEFNU> | ||
| Comment = sProcess.Comment; | ||
| end | ||
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| %% ===== RUN ===== | ||
| function OutputFiles = Run(sProcess, sInputA, sInputB) %#ok<DEFNU> | ||
| % Input options | ||
| OPTIONS = process_corr2('GetConnectOptions', sProcess, sInputA, sInputB); | ||
| if isempty(OPTIONS) | ||
| OutputFiles = {}; | ||
| return | ||
| end | ||
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| OPTIONS.Method = 'aec'; | ||
| % Hilbert and frequency bands options | ||
| OPTIONS.Freqs = sProcess.options.freqbands.Value; | ||
| OPTIONS.isOrth = sProcess.options.isorth.Value; | ||
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| % Compute metric | ||
| OutputFiles = bst_connectivity({sInputA.FileName}, {sInputB.FileName}, OPTIONS); | ||
| end | ||
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