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tutorial files #9

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melissaszy opened this issue Nov 20, 2023 · 0 comments
Open

tutorial files #9

melissaszy opened this issue Nov 20, 2023 · 0 comments

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@melissaszy
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Hello,

I am trying to reproduce the tutorial. I downloaded the project_catalog.csv from https://www.hmpdacc.org/hmp/catalog/grid.php?dataset=metagenomic

This csv file is different from the one in the tutorial. after running all the code up to:
filter(HMP.Isolation.Body.Site=='gastrointestinal_tract' & Gene.Count>0) %>% .$Sequence.Read.Archive.ID

I get length(IDs) 0 instead of 147. May I ask where i can get the correct file?

Cheers!

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