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Missing kmer when using GSNAP in compare/README? #2

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PeteHaitch opened this issue Mar 2, 2014 · 0 comments
Closed

Missing kmer when using GSNAP in compare/README? #2

PeteHaitch opened this issue Mar 2, 2014 · 0 comments

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@PeteHaitch
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lines 44-45

GSNAP:
    python src/gsnap-meth.py index $REF

I think there needs to be a kmer size specified in this command following $REF. What kmer size have you used?
@brentp brentp closed this as completed in d3d465f Mar 4, 2014
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@PeteHaitch