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  • University of Utah
  • Corvallis, OR
  • Twitter @brent_p


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  1. echtvar Public

    using all the bits for echt rapid variant annotation and filtering

    Rust 92 5

  2. mosdepth Public

    fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

    Nim 520 85

  3. slivar Public

    genetic variant expressions, annotation, and filtering for great good.

    Nim 178 15

  4. somalier Public

    fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

    Nim 176 28

  5. vcfanno Public

    annotate a VCF with other VCFs/BEDs/tabixed files

    Go 314 55

  6. cyvcf2 Public

    cython + htslib == fast VCF and BCF processing

    Cython 314 63

352 contributions in the last year

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Contribution activity

December 2022

Created 1 commit in 1 repository

Created a pull request in arq5x/bedtools2 that received 1 comment

fix coverage formatting when scale == 1

closes #371 the new test prints 1e6 for previous versions of bedtools.

+41 −6 1 comment

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