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  1. bio-playground

    miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.

    JavaScript 94 53

  2. vcfanno

    annotate a VCF with other VCFs/BEDs/tabixed files

    Go 81 14

  3. hts-python

    pythonic wrapper for libhts

    Python 38 9

  4. cyvcf2

    cython + htslib == fast VCF and BCF processing

    C 39 14

  5. xopen

    open files for buffered reading and writing in #golang

    Go 31 4

  6. gargs

    better(?) xargs in go

    Go 22 1

1,991 contributions in the last year

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Contribution activity First pull request First issue First repository Joined GitHub

December 2016

Created an issue in samtools/bcftools that received 4 comments

@#### in output from `bcftools csq`

using ftp://ftp.ensembl.org/pub/grch37/release-84/gff3/homo_sapiens/Homo_sapiens.GRCh37.82.chr.gff3.gz and the attached oo.vcf.gz file with the com…

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