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  1. bio-playground

    miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.

    JavaScript 100 57

  2. vcfanno

    annotate a VCF with other VCFs/BEDs/tabixed files

    Go 91 17

  3. hts-python

    pythonic wrapper for libhts

    Python 41 10

  4. cyvcf2

    cython + htslib == fast VCF and BCF processing

    C 60 18

  5. xopen

    open files for buffered reading and writing in #golang

    Go 31 4

  6. gargs

    better(?) xargs in go

    Go 29 2

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Contribution activity First pull request First issue First repository Joined GitHub

February 2017

Created a pull request in kislyuk/aegea that received 2 comments

use getattr instaed of vars for easier faking of args

I am using aegea from python and I have an AegeaArgs object to emulate the args passed around in batch.py. This change makes it easier to implement…

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