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Organizations

@quinlan-lab

Pinned repositories

  1. vcfanno

    annotate a VCF with other VCFs/BEDs/tabixed files

    Go 155 27

  2. xopen

    open files for buffered reading and writing in #golang

    Go 40 4

  3. gargs

    better(?) xargs in go

    Go 53 4

  4. mosdepth

    fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

    Nim 133 26

  5. goleft

    goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

    Go 106 13

  6. hts-nim

    nim wrapper for htslib for parsing genomics data files

    Nim 63 8

1,089 contributions in the last year

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Contribution activity

July 2018

Created an issue in samtools/htslib that received 1 comment

error with cram queries and multiple threads.

with devel of samtools and htslib, the command: samtools view -T Homo_sapiens_assembly38.fasta -c subset.cram chr22 gives exit code 0 and the expe…

1 comment

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